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The map label for this gene is rarA [H]

Identifier: 119945376

GI number: 119945376

Start: 2021240

End: 2022568

Strand: Direct

Name: rarA [H]

Synonym: Ping_1664

Alternate gene names: 119945376

Gene position: 2021240-2022568 (Clockwise)

Preceding gene: 119945375

Following gene: 119945377

Centisome position: 44.33

GC content: 42.51

Gene sequence:

>1329_bases
ATGAAAGATCTTTTTGAATTTAATAATGATTTTCAGCCATTAGCGGCACGAATGCGGCCAAAATTTTTTTCAAATTACAT
TGGCCAGGCACATATTATCGGTGCCGGTAAACCGTTACGCAATGCATTAGAAAATGGTGCTGCGCACTCCATGATTTTAT
GGGGTCCGCCCGGTACGGGTAAAACAACCTTAGCAGAATTAATAGCATCCTACTGTGATGCGCATGTAGAGCGTCTTTCG
GCGGTGACCTCGGGGATTAAAGAAATACGTGCTGCGATTGAAATTGCCCAACAAAATCGCACTAATGGTATTCGTACCTT
GTTGTTTGTTGATGAAGTACATCGTTTTAACAAGGCCCAGCAGGATGCTTTTCTGCCCTATATTGAAGATGGCACTATCT
TATTTATTGGTGCAACGACGGAAAATCCTTCCTTCGAGCTCAATAATGCATTGTTATCCAGAGCGCGGATCTATTTATTA
AAAAAACTCAGTGAAGCTGAAATCATCGCTGTGATTGATCAGGCTTGTTCTTCAGTCGATGGACTCGCAAATAAAAACAT
TCAATTTGTGGGTGATGTAAAAGAAAAATTAGCGCAACTTGTACAAGGGGATGCCAGAAAAGCCCTTAATTATCTCGAAT
TATTGGCAGATATGGCCATTGATTCTGAGCAAAGTTTATCCATTAATCTAGATCTCTTAAAGGAGATAGCAGGTCGTGAA
GGGGTTAGCTTTGATAAAAAAGGGGATCTTTTTTACGATTTAATATCGGCCTTTCATAAATCAGTGCGTGGTTCAGATCC
CGATGCTGCACTTTATTGGTATGCGCGTATGCTCGCTGGTGGATGTGATCCGCTGTATGTGGCGCGCAGGTTATTAGCAA
TTGCATCGGAAGACATTGGTAATGCCGATCCGCGGGCGATGCAAATTGCAATAAATGCCTGGGATTGTTTTGCCCGCGTT
GGACCCTATGAAGGTGAGCGGGCAATTGCTCAGGCGATTGTCTACTGCGCCAGTGCACCTAAAAGTAATGCCGTCTATAC
GGCCTTTGCCAATGCTAAGCAAGCGGTGAAAGATTTTCCTGAATATGAAGTGCCATTACATCTTCGTAATGCACCGACTA
AATTAATGAAGGAACTTGACCATAGTTTAGGTTATCGTTATGCGCATGAGGAAGACGGCGCATTTGCTGCCGGTGAAGTT
TATCTGCCGGAAGCCTTACAGGGCACTAAGTTTTATCGAGCAACAGATCGTGGTTTTGAAAAGCAAATTGCCGCCAAACT
TAATTATTTAGATGAGTTAAACCAGCAAAGTAATAATAAACGTTATTAG

Upstream 100 bases:

>100_bases
GTGAGTTTAAATTGAGTCATAAAGTCTTATCTAAGCCCTGGGTGGAAGGCTTTTTTGATTTTAGCATCCCAGCAGGTGTT
GAAATAGATGATCAACGTTA

Downstream 100 bases:

>100_bases
TAATTATATCGCTTATGGGATAATTTTTATAGGGTGTTAATAGTGCAACAGAGACAGAGTATGAGACATTTTTATGAATA
GTATGGTTATAAATCTAGCC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKDLFEFNNDFQPLAARMRPKFFSNYIGQAHIIGAGKPLRNALENGAAHSMILWGPPGTGKTTLAELIASYCDAHVERLS
AVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIEDGTILFIGATTENPSFELNNALLSRARIYLL
KKLSEAEIIAVIDQACSSVDGLANKNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSLSINLDLLKEIAGRE
GVSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARMLAGGCDPLYVARRLLAIASEDIGNADPRAMQIAINAWDCFARV
GPYEGERAIAQAIVYCASAPKSNAVYTAFANAKQAVKDFPEYEVPLHLRNAPTKLMKELDHSLGYRYAHEEDGAFAAGEV
YLPEALQGTKFYRATDRGFEKQIAAKLNYLDELNQQSNNKRY

Sequences:

>Translated_442_residues
MKDLFEFNNDFQPLAARMRPKFFSNYIGQAHIIGAGKPLRNALENGAAHSMILWGPPGTGKTTLAELIASYCDAHVERLS
AVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIEDGTILFIGATTENPSFELNNALLSRARIYLL
KKLSEAEIIAVIDQACSSVDGLANKNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSLSINLDLLKEIAGRE
GVSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARMLAGGCDPLYVARRLLAIASEDIGNADPRAMQIAINAWDCFARV
GPYEGERAIAQAIVYCASAPKSNAVYTAFANAKQAVKDFPEYEVPLHLRNAPTKLMKELDHSLGYRYAHEEDGAFAAGEV
YLPEALQGTKFYRATDRGFEKQIAAKLNYLDELNQQSNNKRY
>Mature_442_residues
MKDLFEFNNDFQPLAARMRPKFFSNYIGQAHIIGAGKPLRNALENGAAHSMILWGPPGTGKTTLAELIASYCDAHVERLS
AVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIEDGTILFIGATTENPSFELNNALLSRARIYLL
KKLSEAEIIAVIDQACSSVDGLANKNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSLSINLDLLKEIAGRE
GVSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARMLAGGCDPLYVARRLLAIASEDIGNADPRAMQIAINAWDCFARV
GPYEGERAIAQAIVYCASAPKSNAVYTAFANAKQAVKDFPEYEVPLHLRNAPTKLMKELDHSLGYRYAHEEDGAFAAGEV
YLPEALQGTKFYRATDRGFEKQIAAKLNYLDELNQQSNNKRY

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=44.1913439635535, Blast_Score=319, Evalue=3e-87,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=40.0911161731207, Blast_Score=264, Evalue=1e-70,
Organism=Escherichia coli, GI1787119, Length=437, Percent_Identity=65.2173913043478, Blast_Score=577, Evalue=1e-166,
Organism=Saccharomyces cerevisiae, GI6324111, Length=405, Percent_Identity=41.2345679012346, Blast_Score=293, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48990; Mature: 48990

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLFEFNNDFQPLAARMRPKFFSNYIGQAHIIGAGKPLRNALENGAAHSMILWGPPGTG
CCCHHHCCCCHHHHHHHHCHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEEEECCCCCC
KTTLAELIASYCDAHVERLSAVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHH
QDAFLPYIEDGTILFIGATTENPSFELNNALLSRARIYLLKKLSEAEIIAVIDQACSSVD
HHCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GLANKNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSLSINLDLLKEIAGRE
HHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCC
GVSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARMLAGGCDPLYVARRLLAIASEDIG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPRAMQIAINAWDCFARVGPYEGERAIAQAIVYCASAPKSNAVYTAFANAKQAVKDFP
CCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCC
EYEVPLHLRNAPTKLMKELDHSLGYRYAHEEDGAFAAGEVYLPEALQGTKFYRATDRGFE
CCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCHHHCCCCEEEHHCCCHH
KQIAAKLNYLDELNQQSNNKRY
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKDLFEFNNDFQPLAARMRPKFFSNYIGQAHIIGAGKPLRNALENGAAHSMILWGPPGTG
CCCHHHCCCCHHHHHHHHCHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEEEECCCCCC
KTTLAELIASYCDAHVERLSAVTSGIKEIRAAIEIAQQNRTNGIRTLLFVDEVHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHH
QDAFLPYIEDGTILFIGATTENPSFELNNALLSRARIYLLKKLSEAEIIAVIDQACSSVD
HHCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GLANKNIQFVGDVKEKLAQLVQGDARKALNYLELLADMAIDSEQSLSINLDLLKEIAGRE
HHCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCC
GVSFDKKGDLFYDLISAFHKSVRGSDPDAALYWYARMLAGGCDPLYVARRLLAIASEDIG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPRAMQIAINAWDCFARVGPYEGERAIAQAIVYCASAPKSNAVYTAFANAKQAVKDFP
CCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCC
EYEVPLHLRNAPTKLMKELDHSLGYRYAHEEDGAFAAGEVYLPEALQGTKFYRATDRGFE
CCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCHHHCCCCEEEHHCCCHH
KQIAAKLNYLDELNQQSNNKRY
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]