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The map label for this gene is tnpR [H]

Identifier: 119945311

GI number: 119945311

Start: 1951278

End: 1951847

Strand: Reverse

Name: tnpR [H]

Synonym: Ping_1594

Alternate gene names: 119945311

Gene position: 1951847-1951278 (Counterclockwise)

Preceding gene: 119945312

Following gene: 119945302

Centisome position: 42.81

GC content: 41.58

Gene sequence:

>570_bases
ATGAGAACTTTTGCATATTGCCGCGTTTCGACAACAGAGCAAACAACTGAAAATCAAATCTTAGCAATTAGCAATGCAGG
GTATAGTGTCGAAGCACAACGTGTGATCACCGAAACTTGTTCAGGCTCAACCCCGACAGAAAAACGTGCTGAGTTTAAAA
ACCTGGTTGATAACAAACTTGAATCAGGCGATACGTTAATTGTTCTCAAACTTGACCGTCTTGGCCGTGACAACATTAAT
GTACAACAAACAATTCAAAACTTAACCGGTAAAGGAATAAAGGTTATTTGCTTAGACTTACCCGTTGCAGATCTATCAAG
CCCAGAAGGAAAGTTAATGCTGCAAATGTTCTCAGCATTTGCCGAGTTTGAACGTAATCGAATCATCGAACGCACCAATG
AAGGCCTTGCGCGTGCAAAAGCAGAAGGTAAAAAATTAGGCCGCCCCGTCGCGATTAACACCATAGAAACGGTGCAAGAT
GCGAAAGCAACAGGAATTAGCCAAAGTAAAGCGTCTAAAGCAACAGGCTTGTCGATAGCAACAGTTAAGCGTTATTGGAA
TAAAAATTGA

Upstream 100 bases:

>100_bases
TGAGTATCATTAAACGGTATCAGGCTTTTTTGATGCCAACAATCATTTATGATTACGTTTGTTGATACCAGTAGTAAACA
AAAACAGATGGAATAGATTT

Downstream 100 bases:

>100_bases
AGCATTATATTATAATGGTTCATCCCCGTGAGTACGGGGAACACTCACAACACGGAACAGTGCAGTGTGACTGAAGCGGT
TCATCCCCGTAGGCACGGGG

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKLESGDTLIVLKLDRLGRDNIN
VQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAFAEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQD
AKATGISQSKASKATGLSIATVKRYWNKN

Sequences:

>Translated_189_residues
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKLESGDTLIVLKLDRLGRDNIN
VQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAFAEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQD
AKATGISQSKASKATGLSIATVKRYWNKN
>Mature_189_residues
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKLESGDTLIVLKLDRLGRDNIN
VQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAFAEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQD
AKATGISQSKASKATGLSIATVKRYWNKN

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787638, Length=152, Percent_Identity=49.3421052631579, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1787827, Length=150, Percent_Identity=49.3333333333333, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787404, Length=184, Percent_Identity=32.6086956521739, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20784; Mature: 20784

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKL
CCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ESGDTLIVLKLDRLGRDNINVQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAF
CCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHH
AEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQDAKATGISQSKASKATGLSIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCHHHHHHHCCCHHH
TVKRYWNKN
HHHHHHCCC
>Mature Secondary Structure
MRTFAYCRVSTTEQTTENQILAISNAGYSVEAQRVITETCSGSTPTEKRAEFKNLVDNKL
CCCEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ESGDTLIVLKLDRLGRDNINVQQTIQNLTGKGIKVICLDLPVADLSSPEGKLMLQMFSAF
CCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHH
AEFERNRIIERTNEGLARAKAEGKKLGRPVAINTIETVQDAKATGISQSKASKATGLSIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHCCCCHHHHHHHCCCHHH
TVKRYWNKN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027041 [H]