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The map label for this gene is ygcH [H]

Identifier: 119945304

GI number: 119945304

Start: 1942972

End: 1943514

Strand: Direct

Name: ygcH [H]

Synonym: Ping_1587

Alternate gene names: 119945304

Gene position: 1942972-1943514 (Clockwise)

Preceding gene: 119945303

Following gene: 119945305

Centisome position: 42.61

GC content: 42.36

Gene sequence:

>543_bases
ATGTATTTATCACAGGTGATGCTCAACACGCATGACATTTATGAGCAGCATCAAGCTATTTGGAGTTTGTTTGAGAATGT
AGCAGATCGTAAGCGTGATCACTTATTTCGGGTTGAGGTCGCGGATCGGCAATCGTGTAAAGTTTTGTTGCAATCAAGCA
CTGAGCCTAAAAGCAGCGAACAAGCCAAGGTGTTAGCCAGTAAGTCATTTTTGGCTGAGATTAAGCAAGATGCATTTTAT
AAATTCAAGCTGCTGGCTTACCCGACAAAGTGTTTAAGCCAAGGTAAAAAAGTAATAGAAATAAAAGAGGCTAATGAACA
GGTACAGTGGCTACAGCGAAAGCTTAGTGGTGCCAATGTTACTGTGACAGCCATGGATGACCTCATGGTGCGCAGTAAAA
AGTCATATAACAGCCGCTTCGTCTGCTTTGAAGGTATTTTACAAGTAACAGATAGTGAACAAATACAGCGTGCATTAGTG
ATGGGAATTGGCCGTAAAAAACATGCGGGAGCAGGTTTGCTATCACTTGCCCGCACACAATAG

Upstream 100 bases:

>100_bases
ATTACTGCTATAAGGCGGTAGTGGACAAAGATATTATTTATAACGAGATGGGGTTTATAACGACCGATCTCATCGATGAA
TTAACAGCAGGGAGTTAACT

Downstream 100 bases:

>100_bases
GGAGAAGGTATGTATCAAAGAATATATCAAGCTTATCAGTTACTAAGTAATGGTGATAAGGCAGATTTGAAACGCTGCAA
TTTAAAGAAATTGGCCGATT

Product: transcriptional regulator, Fis family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSEQAKVLASKSFLAEIKQDAFY
KFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANVTVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALV
MGIGRKKHAGAGLLSLARTQ

Sequences:

>Translated_180_residues
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSEQAKVLASKSFLAEIKQDAFY
KFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANVTVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALV
MGIGRKKHAGAGLLSLARTQ
>Mature_180_residues
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSEQAKVLASKSFLAEIKQDAFY
KFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANVTVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALV
MGIGRKKHAGAGLLSLARTQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=199, Percent_Identity=37.1859296482412, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010179 [H]

Pfam domain/function: PF08798 CRISPR_assoc [H]

EC number: NA

Molecular weight: Translated: 20529; Mature: 20529

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCH
QAKVLASKSFLAEIKQDAFYKFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCE
TVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALVMGIGRKKHAGAGLLSLARTQ
EEEEHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MYLSQVMLNTHDIYEQHQAIWSLFENVADRKRDHLFRVEVADRQSCKVLLQSSTEPKSSE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCH
QAKVLASKSFLAEIKQDAFYKFKLLAYPTKCLSQGKKVIEIKEANEQVQWLQRKLSGANV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCE
TVTAMDDLMVRSKKSYNSRFVCFEGILQVTDSEQIQRALVMGIGRKKHAGAGLLSLARTQ
EEEEHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]