| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is ygcB [H]
Identifier: 119945303
GI number: 119945303
Start: 1940498
End: 1942969
Strand: Direct
Name: ygcB [H]
Synonym: Ping_1586
Alternate gene names: 119945303
Gene position: 1940498-1942969 (Clockwise)
Preceding gene: 119945301
Following gene: 119945304
Centisome position: 42.56
GC content: 40.9
Gene sequence:
>2472_bases ATGAAACATTTAATAAATAGAAAAAATTCTCACGATGAAAAAATTAACACTTATTTCATGTACTGGGGAAAGGCAAAGAG CGAGTCACAGGCAACGGGTGCTGATTATCATTTATTACCCTATCATTGCTTAGATGTGACGGCGGTAGCTGATGTGTGGC TAGAGGAATCTAATATTCTACTGTCGCAAATATCTTGTTATTTGGACACAACTCAAGATCAGGCAAAACGAATTTGCTTG TTTTTTATCCTACTCCACGATTTAGGAAAGTTTGATGCGCGCTTTCAAAACTTCCGTGAAGATATTCGTCAAATATTACA AGGTGATGATTGGGAAATTGAACCAGATCCAACCTATTACTCGCATGGCTCTTGCGGTTATCGGCAATTTAGTGAGATGT TCGATACTAATGAAGCGATGAAAGCAGTGGCGGGGCATCACGGTTCTTGTGATACCTCTCAGCCCTACCATGATCCAGAT GCGGATGACGAGCTGCTAGAGCTAGATGAACAAGCTAGAAAGGAATGGGTTGAGTTCAGTCTTGACTTTTGTCAGTTAAA AGAAGTTCCCGATGTCGGTGATATTCCCATGTTGGCCGGTTTGTGCAGTGTTGCTGATTGGGTGGGGTCATCCATCACTA ATTTCACAACTGATCCATCTATTAATTTACAGCAGTATTATCAAGACACTTTACTTCGAGCAAGAAAAGCACTCGTCGAT ACAGGCATGATTGAAAAATCACAGGGAGCGGGGTTTGCTTATTTATTTAACGGGTATCGTCCTCGGGGCATTCAAACATT ATTGAGTGAGATGCCATTAAAAGCGGGACTGACCTTAGTCGAGTCGGATACCGGATCAGGTAAAACAGAATTTGCGTTAG CTTATGCGTCCTCTCTTATTGAAGCTGGGCTTGCAGATGGAGTGGTATTTGGTTTACCCACACAGGCAACCGCCAATGGT CTATTTTCTCGCGTGGGAGATGCTGCAAAGAAATTATTTCCTGATACAAAAACGACACTTGCGCATGGTAAATCTAAATA TTTGATGTCAGATGAAAGCGGTTTTTTACAGCAATCAAATAAACGCGCTTTCTTAGGCTCAATGTCAGTGGCAACCATAG ATCAAATTCTGATGGGCGTGCTGGGTATTCGCCATCAATTTGTCCGTTCATTTGGTACGCGAAAATCTGTGTTGGTGCTC GACGAAATTCACAGTTTTGATGCCTATATGTTGGGCCTTATCGAACAAGTTTTAAAAGGGCAGCATCAAGCCTATTCAAG TGTGATTTTACTTTCCGCCACATTGCCTAATACGCTAAAAGAAAAACTACTCTCAACTTACAAAGGAAAATCGCTTAATA ATGCGTATCCGCTTGTTAGCCATACTGACTTATTCGCTACTACCCAAGAATTTACCTTGCCTAAGCAAGCAACTAACAAA ACGATCACTTTAAAAACATGGTGTAGCGATGATCTCTTACCCAGTATTAATCAGCGAAAAAAGATGATTGATTGGGTATC TCAGGGCGCTATGGTTGGGGTTATTTGCAATACAGTAAAAGATGCACAGCGGTTATATCACCAGATTAAAATAGCAAATC CAGAACTGAAAATAGAATTGTTTCATGCGCGTTTTACCTTTGGCGACAGGAAAAAACGAGAAGATCAGGTGCTTAAAAAT TATGACAAAAATGCTAAACGCACGGGACGACTGCTTATTGCCACTCAAGTAATAGAACAATCACTTGATTTAGATTTTGA TGTGCTAATCAGTCAAATTGCACCTATTGAATTTTTGATGCAGCGCATGGGCCGATTATGGCGGCATGAGCGTATAGACA GTGGTTTATGTCCGCGGGCAAGTTGTATTAAAGCACCTTTATTTATCACTTTATTACCCAATGAGAAAATAACAGATCTG ACATCGAGTGAGCAATTAAAGCATCATTACCAAGGCAGCGGATATGTTTATCAAAATAGCCGCTTACTTTATCGCACTGA GCAATATCTAAATCAACATCCATTGTTACATTTTCCTGATTGCTACCGAGAGGCGATAAATTATGTTCACGAGGAACAAT CTTACTCGGAGGAGCCACAAGTTTTAACTTCCGTGGCAGATGAATACAGTATTATAGCTGATGGTAGTAACTATACCGCT CGTTCTTTAAGCAAACTGCAGTCAAAGCCACTTAATGATGTTGATCCGCGCTGCGCATTGTTAACCCGAGATGGTGAAAT GAGTGCCACTGTAGTGCTATTTAAGGAAGACGGTAGTTTATTACACGGTGGGGATTTTAATGAGCAGCAAGACCGAGAAA ACAGCACAGTCGCATTGGCAAAAAAACATGCCAAAGGGATAAAGGACGAACGCTATTACTGCTATAAGGCGGTAGTGGAC AAAGATATTATTTATAACGAGATGGGGTTTATAACGACCGATCTCATCGATGAATTAACAGCAGGGAGTTAA
Upstream 100 bases:
>100_bases GCAATCATTTTTCAATAAATAAATACTGTGTTTTATCTTAAGCACTACATTTCCTGACCTACAAATTGCGTAGAGCCAAA GGTTAAATCGTGGAGCGTTA
Downstream 100 bases:
>100_bases CTATGTATTTATCACAGGTGATGCTCAACACGCATGACATTTATGAGCAGCATCAAGCTATTTGGAGTTTGTTTGAGAAT GTAGCAGATCGTAAGCGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 823
Protein sequence:
>823_residues MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKRICL FFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYYSHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPD ADDELLELDEQARKEWVEFSLDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVD TGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANG LFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSNKRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVL DEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNK TITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIELFHARFTFGDRKKREDQVLKN YDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDL TSSEQLKHHYQGSGYVYQNSRLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTA RSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALAKKHAKGIKDERYYCYKAVVD KDIIYNEMGFITTDLIDELTAGS
Sequences:
>Translated_823_residues MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKRICL FFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYYSHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPD ADDELLELDEQARKEWVEFSLDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVD TGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANG LFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSNKRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVL DEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNK TITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIELFHARFTFGDRKKREDQVLKN YDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDL TSSEQLKHHYQGSGYVYQNSRLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTA RSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALAKKHAKGIKDERYYCYKAVVD KDIIYNEMGFITTDLIDELTAGS >Mature_823_residues MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKRICL FFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYYSHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPD ADDELLELDEQARKEWVEFSLDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVD TGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANG LFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSNKRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVL DEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNK TITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIELFHARFTFGDRKKREDQVLKN YDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDL TSSEQLKHHYQGSGYVYQNSRLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTA RSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALAKKHAKGIKDERYYCYKAVVD KDIIYNEMGFITTDLIDELTAGS
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=870, Percent_Identity=36.2068965517241, Blast_Score=452, Evalue=1e-128,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 92948; Mature: 92948
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNIL CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHH LSQISCYLDTTQDQAKRICLFFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYY HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC SHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPDADDELLELDEQARKEWVEFS CCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVD HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH TGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLI CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCEEEECCCCCCCHHHHHHHHHHHH EAGLADGVVFGLPTQATANGLFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSN HHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEECCCCCHHHCCC KRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKG CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCC QHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNK HHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHCCC TITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIEL EEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHEECCCCEEEEE FHARFTFGDRKKREDQVLKNYDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLM EEEEECCCCCHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHH QRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGYVYQNS HHHHHHHHHHHCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECC RLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTA EEEEHHHHHHCCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCHH RSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALA HHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCEEECCCCCCHHCCCCCHHHHH KKHAKGIKDERYYCYKAVVDKDIIYNEMGFITTDLIDELTAGS HHHHCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC >Mature Secondary Structure MKHLINRKNSHDEKINTYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNIL CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHH LSQISCYLDTTQDQAKRICLFFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTYY HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC SHGSCGYRQFSEMFDTNEAMKAVAGHHGSCDTSQPYHDPDADDELLELDEQARKEWVEFS CCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LDFCQLKEVPDVGDIPMLAGLCSVADWVGSSITNFTTDPSINLQQYYQDTLLRARKALVD HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH TGMIEKSQGAGFAYLFNGYRPRGIQTLLSEMPLKAGLTLVESDTGSGKTEFALAYASSLI CCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCEEEECCCCCCCHHHHHHHHHHHH EAGLADGVVFGLPTQATANGLFSRVGDAAKKLFPDTKTTLAHGKSKYLMSDESGFLQQSN HHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEECCCCCHHHCCC KRAFLGSMSVATIDQILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKG CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCC QHQAYSSVILLSATLPNTLKEKLLSTYKGKSLNNAYPLVSHTDLFATTQEFTLPKQATNK HHHHHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHCCC TITLKTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIKIANPELKIEL EEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHEECCCCEEEEE FHARFTFGDRKKREDQVLKNYDKNAKRTGRLLIATQVIEQSLDLDFDVLISQIAPIEFLM EEEEECCCCCHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHH QRMGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGYVYQNS HHHHHHHHHHHCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECC RLLYRTEQYLNQHPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTA EEEEHHHHHHCCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCHH RSLSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKEDGSLLHGGDFNEQQDRENSTVALA HHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCEEECCCCCCHHCCCCCHHHHH KKHAKGIKDERYYCYKAVVDKDIIYNEMGFITTDLIDELTAGS HHHHCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]