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The map label for this gene is ompU [H]

Identifier: 119945210

GI number: 119945210

Start: 1822557

End: 1823492

Strand: Direct

Name: ompU [H]

Synonym: Ping_1474

Alternate gene names: 119945210

Gene position: 1822557-1823492 (Clockwise)

Preceding gene: 119945209

Following gene: 119945212

Centisome position: 39.97

GC content: 41.88

Gene sequence:

>936_bases
ATGAAAAAAGCAATTTTACCAGCAATGATCGCTGCCCTATTAGCCACTTCTGCGCAAGCTGCGACTGTATATGATGCAGA
CGGTACAACAGCAGATGTTTATGGCCGTATGCAGTTTGATATTAAAGACGACGGTACTGACTCAGACGGCGTTGGCTCTG
CGCGTATGGGCTTTAAAGCAGTATCGTTTATTAATTCTCACGTTGATGCGATGGCACGCGGTGAATGGCAGATTGCAGCT
GAAAATTCTAAGGGCAGCCAATTTACAGCACGTCATTTGTATGCTGGTTTTCAAGGTGAAGAAATGGGGTCATTAGTTTT
TGGTCAAACGGATACTGCATTCTACCAAGTGGTTGGCGTGACTGATATGTTTAACACTTATGGTTACAATGTAATTGATG
GTATTTATCGTGGCCGTCAAGAAGGGCAGATTATCTATTCGGGTGAGTTTTCCGGTTTTTCAGTTGGCGCTTCTTACCAG
TTCCAAGATAAATCTAAAGCACTTGACAATAGCTTAGCTTTAGCTTTAGGTTATCAGATACAAGATGTTGCACTTAAGGC
CGGTTACAGTGTAGAGCAGTATGTTACAGCTGAAGACAAGAAAAACTATGGTCTTTCAGCGACCTATACAATGAATGATC
TATATCTTGCTGCTGTTTATGCAGAATCTAAGCAAGATGGCGTTGCTGACTTCCAAGGTTATGACCTTTTTGCAAGTTAT
AACGTTGTTGCTGCGACGACAGTGTATGGCGGTTATGGCTTCAAAGAAAATACGGTCACAAACACAGATACTGTTGATGA
AGTTACTCTAGGCGCACAATATGACTTTAATGCGCAGCTAAAAACGTGGATTGAATACCAAGCAGATATGGTCAGTGCGA
CAACTGCTGACAAACACGATGACGCTGTAACAGTTGCTTTACAATACAATTTCTAA

Upstream 100 bases:

>100_bases
CTAATGTTATGTCGTGCAGTGCAGATATGCTGTTAAATAAAATTTTTATTGTATCTATAAGTGTTTAATAAAAAAACAAA
CCTAAAACAAGGAAATAAAA

Downstream 100 bases:

>100_bases
GCCGAATTAACTTAAACTTAAACTTAAACTTAAGTTAATGGTTGTTAAGACTTTTAAATCCGATCCTTTGATCGGATTTT
TTATGCCTGAAGGTTTTTAT

Product: porin

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKKAILPAMIAALLATSAQAATVYDADGTTADVYGRMQFDIKDDGTDSDGVGSARMGFKAVSFINSHVDAMARGEWQIAA
ENSKGSQFTARHLYAGFQGEEMGSLVFGQTDTAFYQVVGVTDMFNTYGYNVIDGIYRGRQEGQIIYSGEFSGFSVGASYQ
FQDKSKALDNSLALALGYQIQDVALKAGYSVEQYVTAEDKKNYGLSATYTMNDLYLAAVYAESKQDGVADFQGYDLFASY
NVVAATTVYGGYGFKENTVTNTDTVDEVTLGAQYDFNAQLKTWIEYQADMVSATTADKHDDAVTVALQYNF

Sequences:

>Translated_311_residues
MKKAILPAMIAALLATSAQAATVYDADGTTADVYGRMQFDIKDDGTDSDGVGSARMGFKAVSFINSHVDAMARGEWQIAA
ENSKGSQFTARHLYAGFQGEEMGSLVFGQTDTAFYQVVGVTDMFNTYGYNVIDGIYRGRQEGQIIYSGEFSGFSVGASYQ
FQDKSKALDNSLALALGYQIQDVALKAGYSVEQYVTAEDKKNYGLSATYTMNDLYLAAVYAESKQDGVADFQGYDLFASY
NVVAATTVYGGYGFKENTVTNTDTVDEVTLGAQYDFNAQLKTWIEYQADMVSATTADKHDDAVTVALQYNF
>Mature_311_residues
MKKAILPAMIAALLATSAQAATVYDADGTTADVYGRMQFDIKDDGTDSDGVGSARMGFKAVSFINSHVDAMARGEWQIAA
ENSKGSQFTARHLYAGFQGEEMGSLVFGQTDTAFYQVVGVTDMFNTYGYNVIDGIYRGRQEGQIIYSGEFSGFSVGASYQ
FQDKSKALDNSLALALGYQIQDVALKAGYSVEQYVTAEDKKNYGLSATYTMNDLYLAAVYAESKQDGVADFQGYDLFASY
NVVAATTVYGGYGFKENTVTNTDTVDEVTLGAQYDFNAQLKTWIEYQADMVSATTADKHDDAVTVALQYNF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=360, Percent_Identity=25, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787160, Length=375, Percent_Identity=25.6, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787641, Length=354, Percent_Identity=24.2937853107345, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788544, Length=379, Percent_Identity=23.2189973614776, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 33805; Mature: 33805

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAILPAMIAALLATSAQAATVYDADGTTADVYGRMQFDIKDDGTDSDGVGSARMGFKA
CCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHH
VSFINSHVDAMARGEWQIAAENSKGSQFTARHLYAGFQGEEMGSLVFGQTDTAFYQVVGV
HHHHHHHHHHHHCCCEEEEEECCCCCCEEHHHHHCCCCCCCCCCEEECCCCCEEEEEEEH
TDMFNTYGYNVIDGIYRGRQEGQIIYSGEFSGFSVGASYQFQDKSKALDNSLALALGYQI
HHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCEEECCEEEECCHHHHHCCCEEEEECCEE
QDVALKAGYSVEQYVTAEDKKNYGLSATYTMNDLYLAAVYAESKQDGVADFQGYDLFASY
EEEHHHCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEC
NVVAATTVYGGYGFKENTVTNTDTVDEVTLGAQYDFNAQLKTWIEYQADMVSATTADKHD
CEEEEEEEECCCCCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHEEECCCCCCC
DAVTVALQYNF
CEEEEEEEECC
>Mature Secondary Structure
MKKAILPAMIAALLATSAQAATVYDADGTTADVYGRMQFDIKDDGTDSDGVGSARMGFKA
CCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHH
VSFINSHVDAMARGEWQIAAENSKGSQFTARHLYAGFQGEEMGSLVFGQTDTAFYQVVGV
HHHHHHHHHHHHCCCEEEEEECCCCCCEEHHHHHCCCCCCCCCCEEECCCCCEEEEEEEH
TDMFNTYGYNVIDGIYRGRQEGQIIYSGEFSGFSVGASYQFQDKSKALDNSLALALGYQI
HHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCEEECCEEEECCHHHHHCCCEEEEECCEE
QDVALKAGYSVEQYVTAEDKKNYGLSATYTMNDLYLAAVYAESKQDGVADFQGYDLFASY
EEEHHHCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEEC
NVVAATTVYGGYGFKENTVTNTDTVDEVTLGAQYDFNAQLKTWIEYQADMVSATTADKHD
CEEEEEEEECCCCCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHEEECCCCCCC
DAVTVALQYNF
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]