| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is lon [H]
Identifier: 119945203
GI number: 119945203
Start: 1812487
End: 1814844
Strand: Direct
Name: lon [H]
Synonym: Ping_1467
Alternate gene names: 119945203
Gene position: 1812487-1814844 (Clockwise)
Preceding gene: 119945202
Following gene: 119945204
Centisome position: 39.75
GC content: 40.59
Gene sequence:
>2358_bases ATGAAAACTGAATCAGAGCTGCAATTAACCCTGCCGGTATTACCCCTACGTGATGTAGTGGTTTATCCGCATATGGTTGT TCCACTTTTTGTTGGTAGAAAAAAATCTATCAGCTGTTTAGAAGCTGCCATGGAGCAGGGTAAAAAAGTATTATTAGTGG CGCAAACCGAAGCTTCATTAGATGATCCAAAATTAGAAGATCTGTACACCATCGGGACAGTTGCAAATATTCTGCAATTA TTAAAATTACCCGATGGTACCGTTAAAGTGTTAGTTGAAGGCGTACAACGTGCGCAATTAATTAATAATATTGAAAATAA AGATTATTTTTTTGCTGAGGTTGAGCTACTGGAAAGTGAAGCCATTGATGAAAAAGAGGAAGAGGCTTTATTACGCAGTG TAATGGGGCAATTTGAATCTTATATCAAGCTTAATAAAAAAATCCCACCCGAGGTGTTGGCCTCAGTGAATGGTATTGAT GATCCTGAACGTTTAGCTGATACCATCGCTGCACATATGCCCTTAAGTCTGGAAGATAAACAAACTGCCTTAGAGTTAAA CTCTATCACTGAGCGTTTGGAATATCTGATGGCAATGATGGAAAATGAAGAAGATATTCTGAAAGTTGAAAAACGTATCC GTTCGCGCGTTAAAAAGCAGATGGAGCGGAGTCAGCGCGACTATTACCTTAATGAACAGATGAAAGCGATTCAAAAAGAG TTGGGCGAGTCAGAAGAGGGTGGTAATGATCATGACCAACTTGCTGAAAAAATAGAACAAGCGGGTATGTCTGAAGAAGC TTATGAAAAGGCAACGTCAGAGCTTAAAAAATTAAAAATGATGTCACCAATGTCATCTGAAGCCAGTGTTATACGAACTT ATATTGAAAGCTTAGTGAATGTTCCCTGGAAAAAACGCACGCCGATGAAAAAGAATCTGGCCAAAGCAGAGGAAATATTA GAAGCGGATCATTATGGTTTAGAAAAAGTAAAAGAACGTATTTTAGAATACCTTGCAGTGCAGACGCGGATTAATAAATT AAAGGGACCCATTTTATGTTTAGTTGGTCCTCCCGGTGTTGGTAAAACCTCATTAGGTCAGTCAATTGCGCGTTCCACCG GCCGTAAATATATACGTATGGCATTAGGCGGAGTTCGAGATGAAGCGGAGATTCGCGGACATCGTCGCACCTATATCGGG TCACTACCGGGTAAAATAATTCAAAAAATGAGTAAAGTGGGGGTCAAGAATCCACTGTTTTTATTGGATGAAATAGATAA AATGGCGTCTGATCTGCGTGGTGATCCTGCTTCTGCTTTACTTGAAGTGTTAGATCCAGAGCAAAATAATACTTTTAACG ATCATTATTTAGAAGTTGATTATGATTTGTCCGATGTTATGTTTGTTGCTACGTCCAATTCAATGAATATTCCCGGACCA CTACTGGATCGAATGGAAGTCATTCGTTTGTCGGGTTATACCGAAGACGAAAAATTGAATATTGCTCAGCAGCATCTAAC TGGTAAACAAATCAAACGTAATGGTTTGAAAGAGAATGAAATTAATATCGACGACAGTGCTATTATCGGGATTGTTCGTT ATTACACGCGAGAAGCTGGGGTACGTTCATTAGAGCGCGAAATATCAAAAATTTGTCGTAAAGTGGTTAAACAGATACTG CTTGATAAAAAGATCAAAAAAGTAGACGTCAATATTGATAATTTAAAAGATTATCTCGGGGTGCGAGTATTTGATTTTGG TAAAGCGGATTCGGCCAATCAAGTAGGGCAAGTGACTGGACTTGCCTGGACTGAAGTAGGCGGCGAGTTGTTAACCATTG AAGCGACCTCTGTTCCGGGTAAAGGTAAATTAACCTATACCGGATCCTTGGGTGATGTCATGAAAGAGTCTATTCAGGCT GCGATGACAGTGGTGCGTGCAAAAGCTGAAGAGTGGCGAATCAATGCTGATTTTCATGAAAAACGCGATATTCATGTGCA TGTACCGGAAGGTGCAACGCCTAAAGACGGTCCAAGTGCGGGTGCTGCCATGTGTACTGTGCTGATTTCTAGCCTGACGG GTATTCCTGTTCGAGCTGACGTTGCGATGACCGGGGAAATTACGCTGCGTGGAGAAGTCTTACCAATTGGCGGCTTGAAA GAAAAATTATTAGCGGCAAGACGAGGCGGCATTAAAACTGTCTTAATTCCTTTTGAAAACACCCGTGATTTGGAAGAGAT TCCTGATAACATTAAGGGCGAACTCGAAATTAAACCTGTTCGCTGGATTGATGAAGTGCTGGAAATTGCGCTGCAAGAAA GTATAAAAGGTTTTTCTGTGGAAAAGTCACCAAAATAG
Upstream 100 bases:
>100_bases ATTACCTTGAAAAAAAAACTCCAATCCCCAGTATAGTTTACTACGCTTTTTAAAATTTATTTGTTGATAAGAAAAATAAA TAAATATTTCCGGGGATATT
Downstream 100 bases:
>100_bases GTGATAAACTGCAGAAAATAGAGGGCTGTGGGTGAGTTTTCTATAAATTTACTTGCGCCCAATTAAATAGCAACGTAGCC TTATGAAAATAGAATTGAAC
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MKTESELQLTLPVLPLRDVVVYPHMVVPLFVGRKKSISCLEAAMEQGKKVLLVAQTEASLDDPKLEDLYTIGTVANILQL LKLPDGTVKVLVEGVQRAQLINNIENKDYFFAEVELLESEAIDEKEEEALLRSVMGQFESYIKLNKKIPPEVLASVNGID DPERLADTIAAHMPLSLEDKQTALELNSITERLEYLMAMMENEEDILKVEKRIRSRVKKQMERSQRDYYLNEQMKAIQKE LGESEEGGNDHDQLAEKIEQAGMSEEAYEKATSELKKLKMMSPMSSEASVIRTYIESLVNVPWKKRTPMKKNLAKAEEIL EADHYGLEKVKERILEYLAVQTRINKLKGPILCLVGPPGVGKTSLGQSIARSTGRKYIRMALGGVRDEAEIRGHRRTYIG SLPGKIIQKMSKVGVKNPLFLLDEIDKMASDLRGDPASALLEVLDPEQNNTFNDHYLEVDYDLSDVMFVATSNSMNIPGP LLDRMEVIRLSGYTEDEKLNIAQQHLTGKQIKRNGLKENEINIDDSAIIGIVRYYTREAGVRSLEREISKICRKVVKQIL LDKKIKKVDVNIDNLKDYLGVRVFDFGKADSANQVGQVTGLAWTEVGGELLTIEATSVPGKGKLTYTGSLGDVMKESIQA AMTVVRAKAEEWRINADFHEKRDIHVHVPEGATPKDGPSAGAAMCTVLISSLTGIPVRADVAMTGEITLRGEVLPIGGLK EKLLAARRGGIKTVLIPFENTRDLEEIPDNIKGELEIKPVRWIDEVLEIALQESIKGFSVEKSPK
Sequences:
>Translated_785_residues MKTESELQLTLPVLPLRDVVVYPHMVVPLFVGRKKSISCLEAAMEQGKKVLLVAQTEASLDDPKLEDLYTIGTVANILQL LKLPDGTVKVLVEGVQRAQLINNIENKDYFFAEVELLESEAIDEKEEEALLRSVMGQFESYIKLNKKIPPEVLASVNGID DPERLADTIAAHMPLSLEDKQTALELNSITERLEYLMAMMENEEDILKVEKRIRSRVKKQMERSQRDYYLNEQMKAIQKE LGESEEGGNDHDQLAEKIEQAGMSEEAYEKATSELKKLKMMSPMSSEASVIRTYIESLVNVPWKKRTPMKKNLAKAEEIL EADHYGLEKVKERILEYLAVQTRINKLKGPILCLVGPPGVGKTSLGQSIARSTGRKYIRMALGGVRDEAEIRGHRRTYIG SLPGKIIQKMSKVGVKNPLFLLDEIDKMASDLRGDPASALLEVLDPEQNNTFNDHYLEVDYDLSDVMFVATSNSMNIPGP LLDRMEVIRLSGYTEDEKLNIAQQHLTGKQIKRNGLKENEINIDDSAIIGIVRYYTREAGVRSLEREISKICRKVVKQIL LDKKIKKVDVNIDNLKDYLGVRVFDFGKADSANQVGQVTGLAWTEVGGELLTIEATSVPGKGKLTYTGSLGDVMKESIQA AMTVVRAKAEEWRINADFHEKRDIHVHVPEGATPKDGPSAGAAMCTVLISSLTGIPVRADVAMTGEITLRGEVLPIGGLK EKLLAARRGGIKTVLIPFENTRDLEEIPDNIKGELEIKPVRWIDEVLEIALQESIKGFSVEKSPK >Mature_785_residues MKTESELQLTLPVLPLRDVVVYPHMVVPLFVGRKKSISCLEAAMEQGKKVLLVAQTEASLDDPKLEDLYTIGTVANILQL LKLPDGTVKVLVEGVQRAQLINNIENKDYFFAEVELLESEAIDEKEEEALLRSVMGQFESYIKLNKKIPPEVLASVNGID DPERLADTIAAHMPLSLEDKQTALELNSITERLEYLMAMMENEEDILKVEKRIRSRVKKQMERSQRDYYLNEQMKAIQKE LGESEEGGNDHDQLAEKIEQAGMSEEAYEKATSELKKLKMMSPMSSEASVIRTYIESLVNVPWKKRTPMKKNLAKAEEIL EADHYGLEKVKERILEYLAVQTRINKLKGPILCLVGPPGVGKTSLGQSIARSTGRKYIRMALGGVRDEAEIRGHRRTYIG SLPGKIIQKMSKVGVKNPLFLLDEIDKMASDLRGDPASALLEVLDPEQNNTFNDHYLEVDYDLSDVMFVATSNSMNIPGP LLDRMEVIRLSGYTEDEKLNIAQQHLTGKQIKRNGLKENEINIDDSAIIGIVRYYTREAGVRSLEREISKICRKVVKQIL LDKKIKKVDVNIDNLKDYLGVRVFDFGKADSANQVGQVTGLAWTEVGGELLTIEATSVPGKGKLTYTGSLGDVMKESIQA AMTVVRAKAEEWRINADFHEKRDIHVHVPEGATPKDGPSAGAAMCTVLISSLTGIPVRADVAMTGEITLRGEVLPIGGLK EKLLAARRGGIKTVLIPFENTRDLEEIPDNIKGELEIKPVRWIDEVLEIALQESIKGFSVEKSPK
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=787, Percent_Identity=40.0254129606099, Blast_Score=538, Evalue=1e-153, Organism=Homo sapiens, GI21396489, Length=690, Percent_Identity=39.5652173913043, Blast_Score=490, Evalue=1e-138, Organism=Escherichia coli, GI1786643, Length=780, Percent_Identity=74.4871794871795, Blast_Score=1201, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=663, Percent_Identity=41.1764705882353, Blast_Score=495, Evalue=1e-140, Organism=Caenorhabditis elegans, GI17556486, Length=554, Percent_Identity=40.6137184115523, Blast_Score=426, Evalue=1e-119, Organism=Saccharomyces cerevisiae, GI6319449, Length=750, Percent_Identity=38.1333333333333, Blast_Score=486, Evalue=1e-138, Organism=Drosophila melanogaster, GI221513036, Length=631, Percent_Identity=43.7400950871632, Blast_Score=510, Evalue=1e-144, Organism=Drosophila melanogaster, GI24666867, Length=631, Percent_Identity=43.7400950871632, Blast_Score=509, Evalue=1e-144,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 87651; Mature: 87651
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTESELQLTLPVLPLRDVVVYPHMVVPLFVGRKKSISCLEAAMEQGKKVLLVAQTEASL CCCCCCEEEEECCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCC DDPKLEDLYTIGTVANILQLLKLPDGTVKVLVEGVQRAQLINNIENKDYFFAEVELLESE CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH AIDEKEEEALLRSVMGQFESYIKLNKKIPPEVLASVNGIDDPERLADTIAAHMPLSLEDK CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCH QTALELNSITERLEYLMAMMENEEDILKVEKRIRSRVKKQMERSQRDYYLNEQMKAIQKE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGESEEGGNDHDQLAEKIEQAGMSEEAYEKATSELKKLKMMSPMSSEASVIRTYIESLVN CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC VPWKKRTPMKKNLAKAEEILEADHYGLEKVKERILEYLAVQTRINKLKGPILCLVGPPGV CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC GKTSLGQSIARSTGRKYIRMALGGVRDEAEIRGHRRTYIGSLPGKIIQKMSKVGVKNPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCHH LLDEIDKMASDLRGDPASALLEVLDPEQNNTFNDHYLEVDYDLSDVMFVATSNSMNIPGP HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHH LLDRMEVIRLSGYTEDEKLNIAQQHLTGKQIKRNGLKENEINIDDSAIIGIVRYYTREAG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH VRSLEREISKICRKVVKQILLDKKIKKVDVNIDNLKDYLGVRVFDFGKADSANQVGQVTG HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHC LAWTEVGGELLTIEATSVPGKGKLTYTGSLGDVMKESIQAAMTVVRAKAEEWRINADFHE CCHHHCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCC KRDIHVHVPEGATPKDGPSAGAAMCTVLISSLTGIPVRADVAMTGEITLRGEVLPIGGLK CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECEEEECEEEEECEEEECCCHH EKLLAARRGGIKTVLIPFENTRDLEEIPDNIKGELEIKPVRWIDEVLEIALQESIKGFSV HHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC EKSPK CCCCC >Mature Secondary Structure MKTESELQLTLPVLPLRDVVVYPHMVVPLFVGRKKSISCLEAAMEQGKKVLLVAQTEASL CCCCCCEEEEECCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCC DDPKLEDLYTIGTVANILQLLKLPDGTVKVLVEGVQRAQLINNIENKDYFFAEVELLESE CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHH AIDEKEEEALLRSVMGQFESYIKLNKKIPPEVLASVNGIDDPERLADTIAAHMPLSLEDK CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCH QTALELNSITERLEYLMAMMENEEDILKVEKRIRSRVKKQMERSQRDYYLNEQMKAIQKE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGESEEGGNDHDQLAEKIEQAGMSEEAYEKATSELKKLKMMSPMSSEASVIRTYIESLVN CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC VPWKKRTPMKKNLAKAEEILEADHYGLEKVKERILEYLAVQTRINKLKGPILCLVGPPGV CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC GKTSLGQSIARSTGRKYIRMALGGVRDEAEIRGHRRTYIGSLPGKIIQKMSKVGVKNPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHCCCCCCHH LLDEIDKMASDLRGDPASALLEVLDPEQNNTFNDHYLEVDYDLSDVMFVATSNSMNIPGP HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHH LLDRMEVIRLSGYTEDEKLNIAQQHLTGKQIKRNGLKENEINIDDSAIIGIVRYYTREAG HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH VRSLEREISKICRKVVKQILLDKKIKKVDVNIDNLKDYLGVRVFDFGKADSANQVGQVTG HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHC LAWTEVGGELLTIEATSVPGKGKLTYTGSLGDVMKESIQAAMTVVRAKAEEWRINADFHE CCHHHCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCC KRDIHVHVPEGATPKDGPSAGAAMCTVLISSLTGIPVRADVAMTGEITLRGEVLPIGGLK CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECEEEECEEEEECEEEECCCHH EKLLAARRGGIKTVLIPFENTRDLEEIPDNIKGELEIKPVRWIDEVLEIALQESIKGFSV HHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC EKSPK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]