| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is nosZ [H]
Identifier: 119945164
GI number: 119945164
Start: 1753879
End: 1755771
Strand: Reverse
Name: nosZ [H]
Synonym: Ping_1428
Alternate gene names: 119945164
Gene position: 1755771-1753879 (Counterclockwise)
Preceding gene: 119945165
Following gene: 119945163
Centisome position: 38.51
GC content: 42.47
Gene sequence:
>1893_bases ATGAGTAAGTATAAAAGCGATCTACCCAACGATGAAAAACTGGAAAATTCAGACCGACGTAAATTTTTTGGTAAAAGTGC GGCCTTTGGCGTAGCGGCAGCTGCCGTGCCAATGTCAGCGGTCATGTTTTCCTCTATGGCAAAAGCGCAGGCGGCTGAGG CAAGCAATAGCACCGCCGTCCATCCTGGTGATTTAGATGAATATTATGGCTTCTGGAGTGGCGGTCAGTCAGGCGAAGTC CGTATTATGGGTATTCCTTCAATGCGTGAATTAATGCGTATTCCGGTTTTTAATTTGGACAGTGCAACGGGTTGGGGATT AACTAACGAAAGTAAACGTATTAAAGGCGACAGTGCCCATTTTATGACCGGGGATGCACATCATCCGCACATGAGTATGA CCGATGGTCGTTATAACGGTGAGTATCTTTTTATTAACGACAAAGCTAACTCACGTGTTGCACGTATTCGTTGCGATGTC ATGAAAACCGATAAAATGATCACTATTCCTAACGTACAAGGGGTCCATGGTTTACGTGTTCAGAAAGTACCTGAAACTAA ATATGTGATTTGTAATGGTGAGTTTGAAATTCCAATGAATAATGACGGTAAAGCGTCACTGGAAGATGTCAGTACTTATC GTTCATTATTTAGTGTGATTAACGCGCAAACAATGGAAATTGCTTTTCAGGTGATGGTCGACGGGAACTTGGATAATACC GATGCCGATTACGACGGCAAATATTTTGCATCTACTTGTTATAACTCAGAAATGGGCATGACCTTAGGGGCCATGATCAC AGCAGAACGTGACCATGTGGTGGTCTTTAGTTTAGCGCGTTGTGAAGCCGCCGTTAAAGCGGGTAAATTCAAAACTTATA ACAGTAATAATGTCCCTGTATTAGACGGCCGTAAAGGATCAAAACTTACCCGTTATATTCCAGTCCCTAAATCACCCCAT GGTGTTAATACCTCACCTTCTGGCAAATATTTTATTGCTAACGGCAAGTTGTCTCCCACAGTTTCTATTATTTCGATTGA GAAATTAGATGCCTTATTTGATGATAAAATTAAACCACGCGATACAGTAGTTGCAGAGCCTGAATTAGGTTTAGGGCCAC TGCATACTGCCTTTGATAACAAAGGAAATGCTTATACCACTCTGTTTATTGACAGCCAGATAGCCAAATGGAATATTGAA GATGCGATCAAAGCGCATAATGGTGAAAAAGTGAAATATCTTCGCCAGAAACTGGATGTACATTATCAACCCGGTCATAA CCATACTTCTATGGGTGAAACTCGTGATGCAGACGGCAAATGGTTAGTGGTACTGAGTAAATTCTCTAAAGATAGATTTT TACCTGTTGGTCCGTTACATCCAGAAAACGATCAGTTAGTTGATATTTCCGGTGACGAAATGAAACTGGTCCATGACGGC CCCGCTTTTGCTGAACCCCATGATTGTATTTTGGTTCACCGCAGTAAAATAAGAACAGCAAAATTATGGACACGTGATGA CCGCATGTTTGCTGAAACCGTTGCCATGGCTAAAAAAGATGGCGTTAATGTTGATACCGACAATAAAGTCATTCGTGATG GTAATAAAGTGCGAGTATACATGACCTCCGTTGCGCCTATGTATGGCATGACTGAATTTAAAGTGAAGCTTGGAGATGAA GTGACCGTCGTGGTGACTAACCTCGACATGGTAGAAGATGTTACCCATGGTTTCTGTATGATTAACCACGGTGTGCAGAT GGAGATTGGCCCGCAGGCAACCTCATCTGTTACTTTTACCGCAAGCCAACCTGGTGTGCAGTGGTATTACTGTAACTGGT TCTGTCATGCATTACATATGGAAATGCGCGGTCGTATGTTAGTCGAAGCATAA
Upstream 100 bases:
>100_bases TCATTCCGGACTCTGACCTTAAATATTGAGCTCTCAGTTCCAGTGAAATAACAAGGTAAATTATTAATTCCACTATAAAC CAACAGGATGGAGATATAGC
Downstream 100 bases:
>100_bases GCCATCCCATGGGATCCCGGCAACTTATTGACCGGGACCCCATCATCACAAAACCAATCTATTAGGAAAATTAATTTGTT GAAAATCAATTCATTGAACA
Product: nitrous-oxide reductase
Products: NA
Alternate protein names: N(2)OR; N2O reductase [H]
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MSKYKSDLPNDEKLENSDRRKFFGKSAAFGVAAAAVPMSAVMFSSMAKAQAAEASNSTAVHPGDLDEYYGFWSGGQSGEV RIMGIPSMRELMRIPVFNLDSATGWGLTNESKRIKGDSAHFMTGDAHHPHMSMTDGRYNGEYLFINDKANSRVARIRCDV MKTDKMITIPNVQGVHGLRVQKVPETKYVICNGEFEIPMNNDGKASLEDVSTYRSLFSVINAQTMEIAFQVMVDGNLDNT DADYDGKYFASTCYNSEMGMTLGAMITAERDHVVVFSLARCEAAVKAGKFKTYNSNNVPVLDGRKGSKLTRYIPVPKSPH GVNTSPSGKYFIANGKLSPTVSIISIEKLDALFDDKIKPRDTVVAEPELGLGPLHTAFDNKGNAYTTLFIDSQIAKWNIE DAIKAHNGEKVKYLRQKLDVHYQPGHNHTSMGETRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLVDISGDEMKLVHDG PAFAEPHDCILVHRSKIRTAKLWTRDDRMFAETVAMAKKDGVNVDTDNKVIRDGNKVRVYMTSVAPMYGMTEFKVKLGDE VTVVVTNLDMVEDVTHGFCMINHGVQMEIGPQATSSVTFTASQPGVQWYYCNWFCHALHMEMRGRMLVEA
Sequences:
>Translated_630_residues MSKYKSDLPNDEKLENSDRRKFFGKSAAFGVAAAAVPMSAVMFSSMAKAQAAEASNSTAVHPGDLDEYYGFWSGGQSGEV RIMGIPSMRELMRIPVFNLDSATGWGLTNESKRIKGDSAHFMTGDAHHPHMSMTDGRYNGEYLFINDKANSRVARIRCDV MKTDKMITIPNVQGVHGLRVQKVPETKYVICNGEFEIPMNNDGKASLEDVSTYRSLFSVINAQTMEIAFQVMVDGNLDNT DADYDGKYFASTCYNSEMGMTLGAMITAERDHVVVFSLARCEAAVKAGKFKTYNSNNVPVLDGRKGSKLTRYIPVPKSPH GVNTSPSGKYFIANGKLSPTVSIISIEKLDALFDDKIKPRDTVVAEPELGLGPLHTAFDNKGNAYTTLFIDSQIAKWNIE DAIKAHNGEKVKYLRQKLDVHYQPGHNHTSMGETRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLVDISGDEMKLVHDG PAFAEPHDCILVHRSKIRTAKLWTRDDRMFAETVAMAKKDGVNVDTDNKVIRDGNKVRVYMTSVAPMYGMTEFKVKLGDE VTVVVTNLDMVEDVTHGFCMINHGVQMEIGPQATSSVTFTASQPGVQWYYCNWFCHALHMEMRGRMLVEA >Mature_629_residues SKYKSDLPNDEKLENSDRRKFFGKSAAFGVAAAAVPMSAVMFSSMAKAQAAEASNSTAVHPGDLDEYYGFWSGGQSGEVR IMGIPSMRELMRIPVFNLDSATGWGLTNESKRIKGDSAHFMTGDAHHPHMSMTDGRYNGEYLFINDKANSRVARIRCDVM KTDKMITIPNVQGVHGLRVQKVPETKYVICNGEFEIPMNNDGKASLEDVSTYRSLFSVINAQTMEIAFQVMVDGNLDNTD ADYDGKYFASTCYNSEMGMTLGAMITAERDHVVVFSLARCEAAVKAGKFKTYNSNNVPVLDGRKGSKLTRYIPVPKSPHG VNTSPSGKYFIANGKLSPTVSIISIEKLDALFDDKIKPRDTVVAEPELGLGPLHTAFDNKGNAYTTLFIDSQIAKWNIED AIKAHNGEKVKYLRQKLDVHYQPGHNHTSMGETRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLVDISGDEMKLVHDGP AFAEPHDCILVHRSKIRTAKLWTRDDRMFAETVAMAKKDGVNVDTDNKVIRDGNKVRVYMTSVAPMYGMTEFKVKLGDEV TVVVTNLDMVEDVTHGFCMINHGVQMEIGPQATSSVTFTASQPGVQWYYCNWFCHALHMEMRGRMLVEA
Specific function: Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide [H]
COG id: COG4263
COG function: function code C; Nitrous oxide reductase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001505 - InterPro: IPR008972 - InterPro: IPR002429 - InterPro: IPR011045 - InterPro: IPR006311 - InterPro: IPR015943 [H]
Pfam domain/function: PF00116 COX2 [H]
EC number: =1.7.99.6 [H]
Molecular weight: Translated: 69974; Mature: 69843
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00078 COX2 ; PS50857 COX2_CUA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKYKSDLPNDEKLENSDRRKFFGKSAAFGVAAAAVPMSAVMFSSMAKAQAAEASNSTAV CCCCCCCCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HPGDLDEYYGFWSGGQSGEVRIMGIPSMRELMRIPVFNLDSATGWGLTNESKRIKGDSAH CCCCCHHHCCCCCCCCCCCEEEEECCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCE FMTGDAHHPHMSMTDGRYNGEYLFINDKANSRVARIRCDVMKTDKMITIPNVQGVHGLRV EEECCCCCCCCCCCCCEECCEEEEEECCCCCEEEEEEEEEEECCCEEECCCCCCCCCEEE QKVPETKYVICNGEFEIPMNNDGKASLEDVSTYRSLFSVINAQTMEIAFQVMVDGNLDNT EECCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCC DADYDGKYFASTCYNSEMGMTLGAMITAERDHVVVFSLARCEAAVKAGKFKTYNSNNVPV CCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHCCCEEEECCCCCEE LDGRKGSKLTRYIPVPKSPHGVNTSPSGKYFIANGKLSPTVSIISIEKLDALFDDKIKPR EECCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEHHHHHHHCCCCCCC DTVVAEPELGLGPLHTAFDNKGNAYTTLFIDSQIAKWNIEDAIKAHNGEKVKYLRQKLDV CCEEECCCCCCCCCHHHHCCCCCEEEEEEEECCEEECCHHHHHHHCCCHHHHHHHHHCCE HYQPGHNHTSMGETRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLVDISGDEMKLVHDG EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEECC PAFAEPHDCILVHRSKIRTAKLWTRDDRMFAETVAMAKKDGVNVDTDNKVIRDGNKVRVY CCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEE MTSVAPMYGMTEFKVKLGDEVTVVVTNLDMVEDVTHGFCMINHGVQMEIGPQATSSVTFT EEECCCCCCCEEEEEEECCEEEEEEECCHHHHHHCCCEEEEECCEEEEECCCCCCEEEEE ASQPGVQWYYCNWFCHALHMEMRGRMLVEA ECCCCCEEEEHHHEEEHHHHHHCCEEEECC >Mature Secondary Structure SKYKSDLPNDEKLENSDRRKFFGKSAAFGVAAAAVPMSAVMFSSMAKAQAAEASNSTAV CCCCCCCCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HPGDLDEYYGFWSGGQSGEVRIMGIPSMRELMRIPVFNLDSATGWGLTNESKRIKGDSAH CCCCCHHHCCCCCCCCCCCEEEEECCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCE FMTGDAHHPHMSMTDGRYNGEYLFINDKANSRVARIRCDVMKTDKMITIPNVQGVHGLRV EEECCCCCCCCCCCCCEECCEEEEEECCCCCEEEEEEEEEEECCCEEECCCCCCCCCEEE QKVPETKYVICNGEFEIPMNNDGKASLEDVSTYRSLFSVINAQTMEIAFQVMVDGNLDNT EECCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCC DADYDGKYFASTCYNSEMGMTLGAMITAERDHVVVFSLARCEAAVKAGKFKTYNSNNVPV CCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHCCCEEEECCCCCEE LDGRKGSKLTRYIPVPKSPHGVNTSPSGKYFIANGKLSPTVSIISIEKLDALFDDKIKPR EECCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEHHHHHHHCCCCCCC DTVVAEPELGLGPLHTAFDNKGNAYTTLFIDSQIAKWNIEDAIKAHNGEKVKYLRQKLDV CCEEECCCCCCCCCHHHHCCCCCEEEEEEEECCEEECCHHHHHHHCCCHHHHHHHHHCCE HYQPGHNHTSMGETRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLVDISGDEMKLVHDG EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEECC PAFAEPHDCILVHRSKIRTAKLWTRDDRMFAETVAMAKKDGVNVDTDNKVIRDGNKVRVY CCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEE MTSVAPMYGMTEFKVKLGDEVTVVVTNLDMVEDVTHGFCMINHGVQMEIGPQATSSVTFT EEECCCCCCCEEEEEEECCEEEEEEECCHHHHHHCCCEEEEECCEEEEECCCCCCEEEEE ASQPGVQWYYCNWFCHALHMEMRGRMLVEA ECCCCCEEEEHHHEEEHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11342223 [H]