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The map label for this gene is nosD [H]

Identifier: 119945163

GI number: 119945163

Start: 1752478

End: 1753803

Strand: Reverse

Name: nosD [H]

Synonym: Ping_1427

Alternate gene names: 119945163

Gene position: 1753803-1752478 (Counterclockwise)

Preceding gene: 119945164

Following gene: 119945162

Centisome position: 38.46

GC content: 39.74

Gene sequence:

>1326_bases
TTGTTGAAAATCAATTCATTGAACATTAATTTATTGAAGATCATAACTGCTTTATTAATAACCGTCTTAAGTCTGTTTCA
GACAGGGCTTAATGCGACTGTGCTGGAAATCAAAAGCAGTGATAATCTACAACAAAAATTAGATTCAGCCTCGGCTGGCG
ATACACTGCAGTTAGATGCGGGTGAATACCGTGGTAATTTTGTGATCCGCCACAGTATTACTCTCACCGGAAAAGACAAT
GTCACTATTAATGGATTGGGTAAGGGTCATGCGCTGAGGTTATTAACGTCGAATATCAGTGTAAAAAACCTCAATATTAT
TAACTGGGGCGATAATTTAACCGCGCAAAACGCCGCTATTTATGTCGGGCAAAAATCTAACCATCTCATTATTAAAAATA
ACACCTTAAAAGGGGACGGTTTTGGTATTTGGGTACAGGACTCTAATCAGATATTAATTGCCAATAACCGTATTCAAGGC
AACCCTGAATTGCGCTCTGCAGACCGGGGTAATGGTATCCAGCTATCAGTGGTCACTAATGCTGATGTGGTTGGCAATAA
AATCAGTTTCACCCGGGATGGCTTATATATCATCTCCAGTCAAGACAGCGTACTTCGAAACAATAGCATGCACGATTTAC
GCTATGGTGTGCATTATATGTATTCCCACCATAATAAAGTACTCAATAATCTGACTTACAATACCCGTGCAGGGTACGCT
TTAATGAGCTCTAAACACTTACAGGTAAGCGGTAATAAAAGTCGTGACAGCGAAGATTATGGCATGTTACTGAACTTTAT
TACTTCATCAACCATTGACCATAACAGCATCAAAGATGTTTGGACAAAACCGCAAAAAAAAGTCCTTGGGCACCAGGGGA
AAGCTTTGTTTGTTTACAATTCAGCATATAATACAATAAGTTACAATGAAATAAAGTCATCTGAAATTGGCGTTCATTTA
ACCGCAGGTTCTGAGAACAACAAAGTGTTTGGTAACCTCTTTATCAACAATAAAGTGCAGGTTAAATATGTTTCTAATAA
AGAGCAGGAATGGAGCCACAATGGCCGGGGTAATTATTGGAGCAACTATTTAGGTTGGGATCTTGATAACAACGGCACGG
GTGATACCCCCTTTGAACCGAACGACGGTATCGATAAACTTATCTGGCAATACCCGGAAGCAAAAGTGTTATTAGACAGT
CCAGCGGTGTTATTACTGCGCTGGATGCAAAAACAATTTCCCGTACTCAAAGCCGCTGGGGTTAAAGACAGTTTTCCGCT
TATGTTGCCTCCCAAAATCGAAACAAAAGCCAAAAAAAACGCTTAA

Upstream 100 bases:

>100_bases
CGGTCGTATGTTAGTCGAAGCATAAGCCATCCCATGGGATCCCGGCAACTTATTGACCGGGACCCCATCATCACAAAACC
AATCTATTAGGAAAATTAAT

Downstream 100 bases:

>100_bases
TTCAACCTACCAGCTGAAAGGGTAATCAAATTTATGAGTGAAAACATTATATTATTAGAGCAGGTTAATAAAAATTATCA
GCAGCTTGCCGCACTGCACA

Product: transcriptional regulator for copper, periplasmic binding protein, LacI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MLKINSLNINLLKIITALLITVLSLFQTGLNATVLEIKSSDNLQQKLDSASAGDTLQLDAGEYRGNFVIRHSITLTGKDN
VTINGLGKGHALRLLTSNISVKNLNIINWGDNLTAQNAAIYVGQKSNHLIIKNNTLKGDGFGIWVQDSNQILIANNRIQG
NPELRSADRGNGIQLSVVTNADVVGNKISFTRDGLYIISSQDSVLRNNSMHDLRYGVHYMYSHHNKVLNNLTYNTRAGYA
LMSSKHLQVSGNKSRDSEDYGMLLNFITSSTIDHNSIKDVWTKPQKKVLGHQGKALFVYNSAYNTISYNEIKSSEIGVHL
TAGSENNKVFGNLFINNKVQVKYVSNKEQEWSHNGRGNYWSNYLGWDLDNNGTGDTPFEPNDGIDKLIWQYPEAKVLLDS
PAVLLLRWMQKQFPVLKAAGVKDSFPLMLPPKIETKAKKNA

Sequences:

>Translated_441_residues
MLKINSLNINLLKIITALLITVLSLFQTGLNATVLEIKSSDNLQQKLDSASAGDTLQLDAGEYRGNFVIRHSITLTGKDN
VTINGLGKGHALRLLTSNISVKNLNIINWGDNLTAQNAAIYVGQKSNHLIIKNNTLKGDGFGIWVQDSNQILIANNRIQG
NPELRSADRGNGIQLSVVTNADVVGNKISFTRDGLYIISSQDSVLRNNSMHDLRYGVHYMYSHHNKVLNNLTYNTRAGYA
LMSSKHLQVSGNKSRDSEDYGMLLNFITSSTIDHNSIKDVWTKPQKKVLGHQGKALFVYNSAYNTISYNEIKSSEIGVHL
TAGSENNKVFGNLFINNKVQVKYVSNKEQEWSHNGRGNYWSNYLGWDLDNNGTGDTPFEPNDGIDKLIWQYPEAKVLLDS
PAVLLLRWMQKQFPVLKAAGVKDSFPLMLPPKIETKAKKNA
>Mature_441_residues
MLKINSLNINLLKIITALLITVLSLFQTGLNATVLEIKSSDNLQQKLDSASAGDTLQLDAGEYRGNFVIRHSITLTGKDN
VTINGLGKGHALRLLTSNISVKNLNIINWGDNLTAQNAAIYVGQKSNHLIIKNNTLKGDGFGIWVQDSNQILIANNRIQG
NPELRSADRGNGIQLSVVTNADVVGNKISFTRDGLYIISSQDSVLRNNSMHDLRYGVHYMYSHHNKVLNNLTYNTRAGYA
LMSSKHLQVSGNKSRDSEDYGMLLNFITSSTIDHNSIKDVWTKPQKKVLGHQGKALFVYNSAYNTISYNEIKSSEIGVHL
TAGSENNKVFGNLFINNKVQVKYVSNKEQEWSHNGRGNYWSNYLGWDLDNNGTGDTPFEPNDGIDKLIWQYPEAKVLLDS
PAVLLLRWMQKQFPVLKAAGVKDSFPLMLPPKIETKAKKNA

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 49061; Mature: 49061

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKINSLNINLLKIITALLITVLSLFQTGLNATVLEIKSSDNLQQKLDSASAGDTLQLDA
CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCCEEEEEC
GEYRGNFVIRHSITLTGKDNVTINGLGKGHALRLLTSNISVKNLNIINWGDNLTAQNAAI
CCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEE
YVGQKSNHLIIKNNTLKGDGFGIWVQDSNQILIANNRIQGNPELRSADRGNGIQLSVVTN
EEECCCCEEEEECCEECCCCEEEEEECCCEEEEECCEECCCCCCCCCCCCCCEEEEEEEC
ADVVGNKISFTRDGLYIISSQDSVLRNNSMHDLRYGVHYMYSHHNKVLNNLTYNTRAGYA
CCCCCCEEEEEECCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
LMSSKHLQVSGNKSRDSEDYGMLLNFITSSTIDHNSIKDVWTKPQKKVLGHQGKALFVYN
EECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCEEEEEC
SAYNTISYNEIKSSEIGVHLTAGSENNKVFGNLFINNKVQVKYVSNKEQEWSHNGRGNYW
CCCCEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEECCCCCHHHCCCCCCCCC
SNYLGWDLDNNGTGDTPFEPNDGIDKLIWQYPEAKVLLDSPAVLLLRWMQKQFPVLKAAG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCEEEECC
VKDSFPLMLPPKIETKAKKNA
CCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MLKINSLNINLLKIITALLITVLSLFQTGLNATVLEIKSSDNLQQKLDSASAGDTLQLDA
CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCCCEEEEEC
GEYRGNFVIRHSITLTGKDNVTINGLGKGHALRLLTSNISVKNLNIINWGDNLTAQNAAI
CCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEEECCCCCCCCCEEE
YVGQKSNHLIIKNNTLKGDGFGIWVQDSNQILIANNRIQGNPELRSADRGNGIQLSVVTN
EEECCCCEEEEECCEECCCCEEEEEECCCEEEEECCEECCCCCCCCCCCCCCEEEEEEEC
ADVVGNKISFTRDGLYIISSQDSVLRNNSMHDLRYGVHYMYSHHNKVLNNLTYNTRAGYA
CCCCCCEEEEEECCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
LMSSKHLQVSGNKSRDSEDYGMLLNFITSSTIDHNSIKDVWTKPQKKVLGHQGKALFVYN
EECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCEEEEEC
SAYNTISYNEIKSSEIGVHLTAGSENNKVFGNLFINNKVQVKYVSNKEQEWSHNGRGNYW
CCCCEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEECCCCCHHHCCCCCCCCC
SNYLGWDLDNNGTGDTPFEPNDGIDKLIWQYPEAKVLLDSPAVLLLRWMQKQFPVLKAAG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCEEEECC
VKDSFPLMLPPKIETKAKKNA
CCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]