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The map label for this gene is hypD2 [H]

Identifier: 119944958

GI number: 119944958

Start: 1510787

End: 1511905

Strand: Reverse

Name: hypD2 [H]

Synonym: Ping_1207

Alternate gene names: 119944958

Gene position: 1511905-1510787 (Counterclockwise)

Preceding gene: 119944959

Following gene: 119944957

Centisome position: 33.16

GC content: 47.9

Gene sequence:

>1119_bases
ATGACAATAAGTAAAAAATTCAATCCGGATGCCTTTAAAGATCGGGAGATAGTTAATAAACTGGCGCAGGAGATAAAATT
AATCGCTGCGCAAATGGCCCCGCTAAAAATAATGCATATTTGCGGCGGCCATGAAAATGCCATTGTCCGCTATGCCATCC
GCCAATTTTTACCCGCACATATTAAGGTTATCGCAGGTCCAGGTTGCCCGGTCTGCGTTTGCCCGGTAGAGTCAATCGAT
GAAGCAATCACCCTTGCCCTGCTGCCCAAAGTTACCCTGCTCACTTTCGGCGATATTCTGCGGGTGCCCGCAACTAACAG
CTCCTTAGAGGAAGCCCGCGTCAATGGCGGCAGTGTAAAAGTCGTCTATAGCCCCCTTGATGCGATCAAATTTGCCCAAG
ATTCGCCGCAGCAGACCTTTGTTTTTTTCTCTGTCGGTTTTGAAACAACCGCAGCGGGCATTGCTGGACTGATCCACTCG
GGTGTCCCCAAAAACCTCTTTTTTCTGATAGCCAATCGTTATATGCCGCCAGTATTGAAATTATTGATGGAGGTCCATGA
TGACAGCCTGCAGGGATTTCTACTGGCAGGCCATGCAACCGCCATTACCGGCTTGGGGGTTTATGATTTTATGCGCGACG
AGTTTAAGCTGCCTTGTGCCACGGCAGGTTTTGAACCCGTTGATATCCTGCTGGCGATTCGCGAACTGTTAACACTTATC
AAAAACGATCAGCATCAAGTGATTAACTGCTACAGCAGAGTGATTAAAAATGAGGGCAATCTGAAAGCGCAACAATGTCT
TAAGGAAGTGTTTGATCTTATACCCGGCGTGTGGCGCGGAATAGACAAAGTGGAAGATTCTGCCTACGTGCTTAAAGATA
AATACGCCTTTCTTGACGCCAGGAAACAGCTTGCCTGTAAACCGCCCTATTCGCCGCAAGCCCATCATCCGAGCTGTCTC
TGTCATAGAGTAATGCTCGGCGAGGTAGAGCCTCAGGATTGTAAATTATTTAAAAAAGCCTGCACCCCGAGCAAACCCTT
CGGTCCGTGCATGGTTTCCCCCGAAGGTACCTGCCATGTACGCTATAGCTATTCTGAAATCAAAATAGACTCTCTGTAA

Upstream 100 bases:

>100_bases
CAGCCACTATTTCTAAACGCCGCTGCAGGCAATATCAGGCAGAACCACCAACGAGATAACAAGCAACCGGATGACCAGGA
TGACAACAAATAAGAACAAG

Downstream 100 bases:

>100_bases
CAGCGCTGATTTTTAAACTTCGCATAATCTATCGGGCTTGTTTGCAGACTTTTATTATAAGTTTATTTGAGGATAATTTC
ACTCTGTCGACAGGTAATGA

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MTISKKFNPDAFKDREIVNKLAQEIKLIAAQMAPLKIMHICGGHENAIVRYAIRQFLPAHIKVIAGPGCPVCVCPVESID
EAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYSPLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHS
GVPKNLFFLIANRYMPPVLKLLMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLI
KNDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPGVWRGIDKVEDSAYVLKDKYAFLDARKQLACKPPYSPQAHHPSCL
CHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHVRYSYSEIKIDSL

Sequences:

>Translated_372_residues
MTISKKFNPDAFKDREIVNKLAQEIKLIAAQMAPLKIMHICGGHENAIVRYAIRQFLPAHIKVIAGPGCPVCVCPVESID
EAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYSPLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHS
GVPKNLFFLIANRYMPPVLKLLMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLI
KNDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPGVWRGIDKVEDSAYVLKDKYAFLDARKQLACKPPYSPQAHHPSCL
CHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHVRYSYSEIKIDSL
>Mature_371_residues
TISKKFNPDAFKDREIVNKLAQEIKLIAAQMAPLKIMHICGGHENAIVRYAIRQFLPAHIKVIAGPGCPVCVCPVESIDE
AITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYSPLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSG
VPKNLFFLIANRYMPPVLKLLMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLIK
NDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPGVWRGIDKVEDSAYVLKDKYAFLDARKQLACKPPYSPQAHHPSCLC
HRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHVRYSYSEIKIDSL

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=367, Percent_Identity=35.9673024523161, Blast_Score=250, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41073; Mature: 40941

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISKKFNPDAFKDREIVNKLAQEIKLIAAQMAPLKIMHICGGHENAIVRYAIRQFLPAH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
IKVIAGPGCPVCVCPVESIDEAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVK
EEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCEEE
VVYSPLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSGVPKNLFFLIANRYMPPVLK
EEECCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
LLMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLI
HHHHHCCCCCCEEEEECCHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
KNDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPGVWRGIDKVEDSAYVLKDKYAFLDA
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
RKQLACKPPYSPQAHHPSCLCHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHV
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCEEE
RYSYSEIKIDSL
EEECCEEEECCC
>Mature Secondary Structure 
TISKKFNPDAFKDREIVNKLAQEIKLIAAQMAPLKIMHICGGHENAIVRYAIRQFLPAH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
IKVIAGPGCPVCVCPVESIDEAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVK
EEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCEEE
VVYSPLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSGVPKNLFFLIANRYMPPVLK
EEECCHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
LLMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLI
HHHHHCCCCCCEEEEECCHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
KNDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPGVWRGIDKVEDSAYVLKDKYAFLDA
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
RKQLACKPPYSPQAHHPSCLCHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHV
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCEEE
RYSYSEIKIDSL
EEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]