| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is paaE [H]
Identifier: 119944426
GI number: 119944426
Start: 839586
End: 840641
Strand: Direct
Name: paaE [H]
Synonym: Ping_0654
Alternate gene names: 119944426
Gene position: 839586-840641 (Clockwise)
Preceding gene: 119944425
Following gene: 119944427
Centisome position: 18.41
GC content: 39.68
Gene sequence:
>1056_bases ATGACAACATTTTACCCGCTTATGATAAAAGAAATACAACATGAAACGAATGATGCCGTCGTGCTTACATTTGCAATTCC AGCGTCATTATCAGCAGAGTTTAAATTTAAGCCAGGGCAATACCTGACGCTGAAATCAACGCTTGATAATGAGGAGCTGC GCCGTTGTTATTCAATATGCTCATCTGCTAACGACAGCGATCTTAGTATTGGCATTAAAGAAATCCCCGATGGGCGCTTT TCACAATATGCAAATAAAGAATTAAAAGTGGGAGATTCGATTGATGTTATGTCTCCAAAAGGTCAGTTTGGCTTTGAACC TGAAAAAAACACCAATAAAAAATATTTAGGTATTGCCGTTGGCTCAGGCATTACGCCTATTATTTCGATGTTAAAAAGCA CCTTAGAAGCCGAGCCTGAAAGTCAATTTACGCTGCTTTATGGTAATAAAACACTGAATTCCACTATGTTCAAAAGAGAA TTATCCGATTATAAAAATCGCTTTACGGACAGATTGCAGCTTGTTTATTTATTTTCCCGTGAAAGTCATGAGGCTGAACT GCTAAACGGCCGGCTGGATGCGCAAAAACTTCAAGATTTAGGTCATTCCTTTTTTGATTGGAGTAAATTTAATGAGTGCT ATCTGTGTGGTCCGGAGGAGATGTTAGAGCCTTCTTACAGCGTTTTAAATAAAGGCGGACTGCGCAAAGAGAACTTTCAT GTTGAACGCTTTAATATTTCAAAAAGTCCACGACGAGCAATTGAGAGTCATGTTGAAAAAAGCGAGATAACAGTAAAACG TGATGGCCGTATTATGTCAATTGAAATGACTGAAGATGACGATAGTATTTTAGATGCAGCGCTTCGACAAGGTGCTGATC TTCCTCACGCATGTAAAGGGGGCGTCTGTGCAACCTGCATTTGTAAAGTGACATCGGGTACCGTTGAGATGTCGGTTAAT TATAGTTTGGAAGATGAACAAGTTAATAAAGGTTTTGTTCTTAGCTGCCAGGCTGTACCGACTTCAAATGCAGTCACCGT TGACTTTGATGCTTAG
Upstream 100 bases:
>100_bases ATCAGTGAGTTTGGATCAACAGCCTGTAAAGCACATTATAAATGCCTTACTTGTTATGAACCTTTTGATTACTTTAAATG TATTTAATCGAGAACTAATT
Downstream 100 bases:
>100_bases GAGGCAGGGATATTGACTTTAAATAATGAATCAAATTTTCTTCAATGCTCTGAAAAAAAGGGTGTGCTGTTAATACAATT TACGCATTACGAAAAACGTA
Product: phenylacetate-CoA oxygenase/reductase, PaaK subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MTTFYPLMIKEIQHETNDAVVLTFAIPASLSAEFKFKPGQYLTLKSTLDNEELRRCYSICSSANDSDLSIGIKEIPDGRF SQYANKELKVGDSIDVMSPKGQFGFEPEKNTNKKYLGIAVGSGITPIISMLKSTLEAEPESQFTLLYGNKTLNSTMFKRE LSDYKNRFTDRLQLVYLFSRESHEAELLNGRLDAQKLQDLGHSFFDWSKFNECYLCGPEEMLEPSYSVLNKGGLRKENFH VERFNISKSPRRAIESHVEKSEITVKRDGRIMSIEMTEDDDSILDAALRQGADLPHACKGGVCATCICKVTSGTVEMSVN YSLEDEQVNKGFVLSCQAVPTSNAVTVDFDA
Sequences:
>Translated_351_residues MTTFYPLMIKEIQHETNDAVVLTFAIPASLSAEFKFKPGQYLTLKSTLDNEELRRCYSICSSANDSDLSIGIKEIPDGRF SQYANKELKVGDSIDVMSPKGQFGFEPEKNTNKKYLGIAVGSGITPIISMLKSTLEAEPESQFTLLYGNKTLNSTMFKRE LSDYKNRFTDRLQLVYLFSRESHEAELLNGRLDAQKLQDLGHSFFDWSKFNECYLCGPEEMLEPSYSVLNKGGLRKENFH VERFNISKSPRRAIESHVEKSEITVKRDGRIMSIEMTEDDDSILDAALRQGADLPHACKGGVCATCICKVTSGTVEMSVN YSLEDEQVNKGFVLSCQAVPTSNAVTVDFDA >Mature_350_residues TTFYPLMIKEIQHETNDAVVLTFAIPASLSAEFKFKPGQYLTLKSTLDNEELRRCYSICSSANDSDLSIGIKEIPDGRFS QYANKELKVGDSIDVMSPKGQFGFEPEKNTNKKYLGIAVGSGITPIISMLKSTLEAEPESQFTLLYGNKTLNSTMFKREL SDYKNRFTDRLQLVYLFSRESHEAELLNGRLDAQKLQDLGHSFFDWSKFNECYLCGPEEMLEPSYSVLNKGGLRKENFHV ERFNISKSPRRAIESHVEKSEITVKRDGRIMSIEMTEDDDSILDAALRQGADLPHACKGGVCATCICKVTSGTVEMSVNY SLEDEQVNKGFVLSCQAVPTSNAVTVDFDA
Specific function: May be part of a multicomponent oxygenase involved in phenylacetyl-CoA hydroxylation [H]
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Homo sapiens, GI284448553, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI6552328, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI193794826, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI284448551, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI4503327, Length=245, Percent_Identity=25.3061224489796, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI1787658, Length=352, Percent_Identity=48.2954545454545, Blast_Score=386, Evalue=1e-108, Organism=Escherichia coli, GI1787098, Length=345, Percent_Identity=23.4782608695652, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788903, Length=240, Percent_Identity=25.8333333333333, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788104, Length=320, Percent_Identity=22.5, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323510, Length=186, Percent_Identity=27.9569892473118, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322146, Length=183, Percent_Identity=24.5901639344262, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR011884 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 39329; Mature: 39198
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFYPLMIKEIQHETNDAVVLTFAIPASLSAEFKFKPGQYLTLKSTLDNEELRRCYSIC CCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHH SSANDSDLSIGIKEIPDGRFSQYANKELKVGDSIDVMSPKGQFGFEPEKNTNKKYLGIAV CCCCCCCEEEEHHHCCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEE GSGITPIISMLKSTLEAEPESQFTLLYGNKTLNSTMFKRELSDYKNRFTDRLQLVYLFSR CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC ESHEAELLNGRLDAQKLQDLGHSFFDWSKFNECYLCGPEEMLEPSYSVLNKGGLRKENFH CCCHHHHHCCCCCHHHHHHCCCHHHCHHHCCCEEEECCHHHHCCCHHHHHCCCCCCCCEE VERFNISKSPRRAIESHVEKSEITVKRDGRIMSIEMTEDDDSILDAALRQGADLPHACKG EEEECCCCCHHHHHHHHCCHHCEEEEECCEEEEEEECCCCHHHHHHHHHCCCCCCCHHCC GVCATCICKVTSGTVEMSVNYSLEDEQVNKGFVLSCQAVPTSNAVTVDFDA CHHEEEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECC >Mature Secondary Structure TTFYPLMIKEIQHETNDAVVLTFAIPASLSAEFKFKPGQYLTLKSTLDNEELRRCYSIC CCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHH SSANDSDLSIGIKEIPDGRFSQYANKELKVGDSIDVMSPKGQFGFEPEKNTNKKYLGIAV CCCCCCCEEEEHHHCCCCHHHHHCCCCEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEE GSGITPIISMLKSTLEAEPESQFTLLYGNKTLNSTMFKRELSDYKNRFTDRLQLVYLFSR CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC ESHEAELLNGRLDAQKLQDLGHSFFDWSKFNECYLCGPEEMLEPSYSVLNKGGLRKENFH CCCHHHHHCCCCCHHHHHHCCCHHHCHHHCCCEEEECCHHHHCCCHHHHHCCCCCCCCEE VERFNISKSPRRAIESHVEKSEITVKRDGRIMSIEMTEDDDSILDAALRQGADLPHACKG EEEECCCCCHHHHHHHHCCHHCEEEEECCEEEEEEECCCCHHHHHHHHHCCCCCCCHHCC GVCATCICKVTSGTVEMSVNYSLEDEQVNKGFVLSCQAVPTSNAVTVDFDA CHHEEEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503; 10766858 [H]