Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 119944336

GI number: 119944336

Start: 731012

End: 731989

Strand: Direct

Name: dppB [H]

Synonym: Ping_0563

Alternate gene names: 119944336

Gene position: 731012-731989 (Clockwise)

Preceding gene: 119944335

Following gene: 119944337

Centisome position: 16.03

GC content: 41.41

Gene sequence:

>978_bases
ATGTTTACGTTTCTGATCAAGCGCCTTTTTCAGGCTCTGGTAGTGATGTTTGTGATCAGTTTGGTTGCCTTCTCTATTCA
AGATAATCTGGGCGATCCGCTTCGTGAGTTAGTTGGCCAATCTGTCTCCGAGGAAGAGAGACAAATACTACGTGATGAAT
TAGGTCTTAATGATCCATTTCCTGTCAAATACACCCGTTTTATTGTAAATGCTGCCCATGGGGATTTAGGCACTTCTTAT
TTCTTTAAAAAGCCTGTTGTTGAAGTTATATTCGATAAACTTGAAGCAACCCTTGAACTGGTTTTTGGGGCTGCATTGAT
TATTCTTTTTGTGGCTATACCGCTGGGGGTCTACTGTGCTATTCACCCTAAAAGCGCATGGACAAAAATGATTATGGCAT
TCAGCAGTTTGGGTATTTCTGTTCCGGTTTTCCTGACTGCCATTATGCTGATGTATGTGTTTTCCATTGAGCTTCAGTGG
CTGCCCTCCTACGGACGTGGTGAAACCTTTAATGTTTTGGGTTGGGAGACAGGATATCTGACTAAAGATGGTCTGTTACA
CCTTATTTTACCTTGTGTTTCTTTAGCGTCTATTATGTTGCCGCTGTTTATCCGTTTAGTGCGTTCTGAAATGCTGGAAG
CGCTTGGCTCTGAATATGTTAAATTTGCCATGGCGAAAGGGTTGGCGGTGAATAAAGTTCATTACCAGCATGCTCTGAAA
AATACTATGCTGCCGGTGTTGACTGTAGGTGGCGTACAAATAGGGACTATGGTTGCTTATACGATTTTAACCGAGACGGT
ATTTCAATGGCCGGGAACCGGTTTTTTATTTTTAGAAGCAGTTAACCGTGTGGATACACCCTTGATTACGGCTTATGTTA
TTTTTGTCGGTTTAATCTTTGTGGTGACAAATACCGTTGTTGATCTTTTATATGGTGTGGTTGATCCTACTGTTAATATA
ACCGGTAAAGGTGCTTAA

Upstream 100 bases:

>100_bases
GATATAAAAAAGAGATCGTTTTTTCATTAAGATTTTTATGGCGGAGACCTTAGTGCTTCGTTTAAACTTTTATTCTATTA
ATTAATTTGAGGTATAAGGA

Downstream 100 bases:

>100_bases
ACATGAATACTATTACTTCTTCTCATGTCCCGACCCGTTGGGAACGTTTGAAAAACTCAGATCTGATTTATTATTTTCTG
AAAGACAAAGTCGCAATGTT

Product: peptide ABC transporter, protein inner membrane binding component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MFTFLIKRLFQALVVMFVISLVAFSIQDNLGDPLRELVGQSVSEEERQILRDELGLNDPFPVKYTRFIVNAAHGDLGTSY
FFKKPVVEVIFDKLEATLELVFGAALIILFVAIPLGVYCAIHPKSAWTKMIMAFSSLGISVPVFLTAIMLMYVFSIELQW
LPSYGRGETFNVLGWETGYLTKDGLLHLILPCVSLASIMLPLFIRLVRSEMLEALGSEYVKFAMAKGLAVNKVHYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAVNRVDTPLITAYVIFVGLIFVVTNTVVDLLYGVVDPTVNI
TGKGA

Sequences:

>Translated_325_residues
MFTFLIKRLFQALVVMFVISLVAFSIQDNLGDPLRELVGQSVSEEERQILRDELGLNDPFPVKYTRFIVNAAHGDLGTSY
FFKKPVVEVIFDKLEATLELVFGAALIILFVAIPLGVYCAIHPKSAWTKMIMAFSSLGISVPVFLTAIMLMYVFSIELQW
LPSYGRGETFNVLGWETGYLTKDGLLHLILPCVSLASIMLPLFIRLVRSEMLEALGSEYVKFAMAKGLAVNKVHYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAVNRVDTPLITAYVIFVGLIFVVTNTVVDLLYGVVDPTVNI
TGKGA
>Mature_325_residues
MFTFLIKRLFQALVVMFVISLVAFSIQDNLGDPLRELVGQSVSEEERQILRDELGLNDPFPVKYTRFIVNAAHGDLGTSY
FFKKPVVEVIFDKLEATLELVFGAALIILFVAIPLGVYCAIHPKSAWTKMIMAFSSLGISVPVFLTAIMLMYVFSIELQW
LPSYGRGETFNVLGWETGYLTKDGLLHLILPCVSLASIMLPLFIRLVRSEMLEALGSEYVKFAMAKGLAVNKVHYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAVNRVDTPLITAYVIFVGLIFVVTNTVVDLLYGVVDPTVNI
TGKGA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=35.7142857142857, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=30.625, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1789888, Length=323, Percent_Identity=31.8885448916409, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=28.8819875776398, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=33.7313432835821, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1787550, Length=259, Percent_Identity=31.2741312741313, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788504, Length=291, Percent_Identity=27.1477663230241, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36003; Mature: 36003

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTFLIKRLFQALVVMFVISLVAFSIQDNLGDPLRELVGQSVSEEERQILRDELGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
PVKYTRFIVNAAHGDLGTSYFFKKPVVEVIFDKLEATLELVFGAALIILFVAIPLGVYCA
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
IHPKSAWTKMIMAFSSLGISVPVFLTAIMLMYVFSIELQWLPSYGRGETFNVLGWETGYL
ECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCC
TKDGLLHLILPCVSLASIMLPLFIRLVRSEMLEALGSEYVKFAMAKGLAVNKVHYQHALK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAVNRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTVVDLLYGVVDPTVNITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MFTFLIKRLFQALVVMFVISLVAFSIQDNLGDPLRELVGQSVSEEERQILRDELGLNDPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
PVKYTRFIVNAAHGDLGTSYFFKKPVVEVIFDKLEATLELVFGAALIILFVAIPLGVYCA
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
IHPKSAWTKMIMAFSSLGISVPVFLTAIMLMYVFSIELQWLPSYGRGETFNVLGWETGYL
ECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCC
TKDGLLHLILPCVSLASIMLPLFIRLVRSEMLEALGSEYVKFAMAKGLAVNKVHYQHALK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAVNRVDTPLITAYVIFVGLIF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
VVTNTVVDLLYGVVDPTVNITGKGA
HHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]