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The map label for this gene is yidZ [H]

Identifier: 119944317

GI number: 119944317

Start: 695046

End: 695903

Strand: Direct

Name: yidZ [H]

Synonym: Ping_0544

Alternate gene names: 119944317

Gene position: 695046-695903 (Clockwise)

Preceding gene: 119944315

Following gene: 119944318

Centisome position: 15.24

GC content: 44.64

Gene sequence:

>858_bases
TTGAGTCCATCGGCTTTAAGTAAAAGCCTGCAGCGCTTAAGAGAGACGCTGGGTGATCCTCTTTTTGTACGTAATGCACA
TGGATTAAAGCCGACAGCACATGCATTGCAGTTTAAATCACAATTACCCGCCATTTTACAAGGCCTGTACCAAATTACTC
TGCCGCCCGTCTTTACGCCGCATACAAGCCACAGGCAATTTTCTTTTGCAATACTTGAAAGTGCTTATCAAACCCTATTA
CCTTCTTACATAGGACCACTGCTTAAGCAGGCTCCTTTAATAACGCTTGATATATACGGGTGGGCTGAAAAATCAATGCA
GGCTTTATTACAAGGGCAGATTGATTTTGGTATCACCGCGCGGGATTTGCATCCAACATCAGATTTAAGGCTTAATAATC
TACCGGAAGGTATTAATCAAAGTACCTTATTTACTGACCAGCAGATCTGTTTAGTCAGAGTGGGGCATCCTATACTTAAT
ACACTAGAGGTCGGAGGGTGGAATATGGAAAGTTACCTGCAAATGTCACATGTGCAGGTACGCTGCGAAGGTAATGACTG
GTGGGCCTTAGATTATCATCTGGCAGAATCCGGACGGCATAGGCACATCAGCAGTACCCTGCCGGATTTTTATGGTGCAG
CCAGTGTTTGTGCGCACAGTGATCTTATTTTCACCCTACCCTCAAGCTTTGTTGCGCACGCTAAAAAATTATATCCATTA
GTGCAGCTACCCTTACCGCTCACCTTTTCTCCCCTTGCCTATGTCCTGCTATGGCATAAACGTAACGACGATGAACCGGG
TCATAAATGGATAAGAGAAACAATCTGCGCAAGTATTGCGCAGGCAATGAAAGCATGA

Upstream 100 bases:

>100_bases
CAATATCAATAACCTTGCAAAGATTGATCTTAATCTTTTAGTTACCCTGCAAATTTTATTAGAAGAGGAGAGTGCTACCC
GCGCTGCAAACCGTTTAAAC

Downstream 100 bases:

>100_bases
TTATGAGCGTAATCTAAAACCAATTCCTGGGGGGATTAGAGAGGGCTGGCACAATACTGTGGTCACTTTTTAAAACCAAA
ATTCTGATCTCTGAGGCATT

Product: transcriptional regulator, substrate-binding, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSPSALSKSLQRLRETLGDPLFVRNAHGLKPTAHALQFKSQLPAILQGLYQITLPPVFTPHTSHRQFSFAILESAYQTLL
PSYIGPLLKQAPLITLDIYGWAEKSMQALLQGQIDFGITARDLHPTSDLRLNNLPEGINQSTLFTDQQICLVRVGHPILN
TLEVGGWNMESYLQMSHVQVRCEGNDWWALDYHLAESGRHRHISSTLPDFYGAASVCAHSDLIFTLPSSFVAHAKKLYPL
VQLPLPLTFSPLAYVLLWHKRNDDEPGHKWIRETICASIAQAMKA

Sequences:

>Translated_285_residues
MSPSALSKSLQRLRETLGDPLFVRNAHGLKPTAHALQFKSQLPAILQGLYQITLPPVFTPHTSHRQFSFAILESAYQTLL
PSYIGPLLKQAPLITLDIYGWAEKSMQALLQGQIDFGITARDLHPTSDLRLNNLPEGINQSTLFTDQQICLVRVGHPILN
TLEVGGWNMESYLQMSHVQVRCEGNDWWALDYHLAESGRHRHISSTLPDFYGAASVCAHSDLIFTLPSSFVAHAKKLYPL
VQLPLPLTFSPLAYVLLWHKRNDDEPGHKWIRETICASIAQAMKA
>Mature_284_residues
SPSALSKSLQRLRETLGDPLFVRNAHGLKPTAHALQFKSQLPAILQGLYQITLPPVFTPHTSHRQFSFAILESAYQTLLP
SYIGPLLKQAPLITLDIYGWAEKSMQALLQGQIDFGITARDLHPTSDLRLNNLPEGINQSTLFTDQQICLVRVGHPILNT
LEVGGWNMESYLQMSHVQVRCEGNDWWALDYHLAESGRHRHISSTLPDFYGAASVCAHSDLIFTLPSSFVAHAKKLYPLV
QLPLPLTFSPLAYVLLWHKRNDDEPGHKWIRETICASIAQAMKA

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=287, Percent_Identity=33.4494773519164, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081766, Length=250, Percent_Identity=26.8, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081684, Length=285, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31966; Mature: 31835

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSALSKSLQRLRETLGDPLFVRNAHGLKPTAHALQFKSQLPAILQGLYQITLPPVFTP
CCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HTSHRQFSFAILESAYQTLLPSYIGPLLKQAPLITLDIYGWAEKSMQALLQGQIDFGITA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCEEE
RDLHPTSDLRLNNLPEGINQSTLFTDQQICLVRVGHPILNTLEVGGWNMESYLQMSHVQV
CCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCHHHHHHEEEEEE
RCEGNDWWALDYHLAESGRHRHISSTLPDFYGAASVCAHSDLIFTLPSSFVAHAKKLYPL
EECCCCEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
VQLPLPLTFSPLAYVLLWHKRNDDEPGHKWIRETICASIAQAMKA
HCCCCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPSALSKSLQRLRETLGDPLFVRNAHGLKPTAHALQFKSQLPAILQGLYQITLPPVFTP
CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HTSHRQFSFAILESAYQTLLPSYIGPLLKQAPLITLDIYGWAEKSMQALLQGQIDFGITA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCEEE
RDLHPTSDLRLNNLPEGINQSTLFTDQQICLVRVGHPILNTLEVGGWNMESYLQMSHVQV
CCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCHHHHHHEEEEEE
RCEGNDWWALDYHLAESGRHRHISSTLPDFYGAASVCAHSDLIFTLPSSFVAHAKKLYPL
EECCCCEEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
VQLPLPLTFSPLAYVLLWHKRNDDEPGHKWIRETICASIAQAMKA
HCCCCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA