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The map label for this gene is yecS [H]

Identifier: 119944194

GI number: 119944194

Start: 525708

End: 526358

Strand: Reverse

Name: yecS [H]

Synonym: Ping_0414

Alternate gene names: 119944194

Gene position: 526358-525708 (Counterclockwise)

Preceding gene: 119944195

Following gene: 119944193

Centisome position: 11.54

GC content: 42.86

Gene sequence:

>651_bases
ATGGATTGGTCTGCATGGTTGACTTTAATTGGGGGAGCAGGGGTAACTGTTTCCCTATCTCTAGCCGCTATACTATTAAG
CCTACCGCTAGGACTGCTTTTTGGTGTTTTCCGCTGGCAGAAGATCGCAGTACTTAATGGTTTATTGGCTGTATATGTCA
CGTTAATCAGGTCAACCCCTTTTGTGACTTTGGCCCTGTTTGTTTTCTTTGGTCTACCTGAAATTGGCATTGATATGAAT
CCTATCCCAGCAGCAATCTTAGTACTCACGCTGAATTTGACTGCATTCAGCAGTGAAATATGGCGAGCCGCTTTGGATAA
TTTCTCTTCAGAGCAGCTTGAAGCTGCAGAAGCTTATGGTATGAGTCGTATTAAAACCTTTTGGCTGATTATTTTCCCCC
AATTATGGCGGGCCAACCTTGGCCCCTTAACCAGCGAGATCACTATTCTTATAAAGGGAACACCAGCCGTTGCGGTTATC
GGTGTTGTGGAAATTACTCGTGCAGCAAGTCGTATTGGTGCACAAACCTATGACCCTTTACCCCCCTTCCTTATGGCAAT
GATTCTTTATACCTTGTTTGTTGTCATAATCGTAAAAAGTCAGCGTTTACTTGAGAAAAAAATGACGAAAAAGTACAAAG
GAGGTAAATAA

Upstream 100 bases:

>100_bases
AAAAAAGTGGCTAGGACGTTCTTTTGAGGGAATGCCGACATCGACGATTAATTAATTCTAATTCTGTCGTCAGTAATTCA
TTGATAAAAAGGGTTCCACT

Downstream 100 bases:

>100_bases
TGGACCAGTGGCAGATTATTTGGGAAGCTCGAGAGCTGATTTCTTCTGGACTAATGAATACCTTGTATCTGGTTCTGATT
AGCATGGCTCTGAGCATCCC

Product: ABC polar amino acid transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MDWSAWLTLIGGAGVTVSLSLAAILLSLPLGLLFGVFRWQKIAVLNGLLAVYVTLIRSTPFVTLALFVFFGLPEIGIDMN
PIPAAILVLTLNLTAFSSEIWRAALDNFSSEQLEAAEAYGMSRIKTFWLIIFPQLWRANLGPLTSEITILIKGTPAVAVI
GVVEITRAASRIGAQTYDPLPPFLMAMILYTLFVVIIVKSQRLLEKKMTKKYKGGK

Sequences:

>Translated_216_residues
MDWSAWLTLIGGAGVTVSLSLAAILLSLPLGLLFGVFRWQKIAVLNGLLAVYVTLIRSTPFVTLALFVFFGLPEIGIDMN
PIPAAILVLTLNLTAFSSEIWRAALDNFSSEQLEAAEAYGMSRIKTFWLIIFPQLWRANLGPLTSEITILIKGTPAVAVI
GVVEITRAASRIGAQTYDPLPPFLMAMILYTLFVVIIVKSQRLLEKKMTKKYKGGK
>Mature_216_residues
MDWSAWLTLIGGAGVTVSLSLAAILLSLPLGLLFGVFRWQKIAVLNGLLAVYVTLIRSTPFVTLALFVFFGLPEIGIDMN
PIPAAILVLTLNLTAFSSEIWRAALDNFSSEQLEAAEAYGMSRIKTFWLIIFPQLWRANLGPLTSEITILIKGTPAVAVI
GVVEITRAASRIGAQTYDPLPPFLMAMILYTLFVVIIVKSQRLLEKKMTKKYKGGK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=31.25, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=32.8638497652582, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=26.2222222222222, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=25.8215962441315, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1788645, Length=130, Percent_Identity=30, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786874, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=24.7619047619048, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23687; Mature: 23687

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSAWLTLIGGAGVTVSLSLAAILLSLPLGLLFGVFRWQKIAVLNGLLAVYVTLIRSTP
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
FVTLALFVFFGLPEIGIDMNPIPAAILVLTLNLTAFSSEIWRAALDNFSSEQLEAAEAYG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MSRIKTFWLIIFPQLWRANLGPLTSEITILIKGTPAVAVIGVVEITRAASRIGAQTYDPL
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC
PPFLMAMILYTLFVVIIVKSQRLLEKKMTKKYKGGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDWSAWLTLIGGAGVTVSLSLAAILLSLPLGLLFGVFRWQKIAVLNGLLAVYVTLIRSTP
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
FVTLALFVFFGLPEIGIDMNPIPAAILVLTLNLTAFSSEIWRAALDNFSSEQLEAAEAYG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MSRIKTFWLIIFPQLWRANLGPLTSEITILIKGTPAVAVIGVVEITRAASRIGAQTYDPL
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC
PPFLMAMILYTLFVVIIVKSQRLLEKKMTKKYKGGK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]