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The map label for this gene is selU

Identifier: 119944070

GI number: 119944070

Start: 371802

End: 372899

Strand: Direct

Name: selU

Synonym: Ping_0285

Alternate gene names: 119944070

Gene position: 371802-372899 (Clockwise)

Preceding gene: 119944069

Following gene: 119944071

Centisome position: 8.15

GC content: 44.99

Gene sequence:

>1098_bases
ATGCAACAAAGCGACCTTCAAGAGCAACAATTATACCGCTCGTTATTTTTGTTAAAGACCCCGCTGATTGACCTTAGGGC
GCCCGTTGAATTTGCTCAGGGTGCTTTTCCTGAAAGTTGTAACTTACCGCTAATGACAGATAACGAGCGGGAGCAGGTTG
GTACTTGTTATAAAAAAGAGGGACAAGCGGCTGCCATTACACTCGGGCATCAGTTAGTGGCATCGGATATACAAAATCGC
ATTAGAAAATGGGCCCAGTTTAAAGAGGAAAACCCAACGGCATGGCTGTACTGTTTCCGAGGGGGGCTACGCTCACGATT
ATCGGCGCAATTTCTGAAAGATCACGGCGTTGATATTAATATCGTGCCGGGTGGTTATAAAGCGTTGCGCCGTTATCTTA
TTAACGTTATCGATCAGGCGTCTGAGAAAAAGTTAATGATTGTTGGCGGTAATACAGGTTGTGGTAAAACACTGTTAATC
CAAGCGCTTGATAACGGGCTGGATATCGAAGGTCGGGCCAATCACCGCGGCTCCAGTTTTGGTAAGCAGGTAACCGAGCA
GCCGCGGCAAATTAGTTATGAAAATCAACTTGCGGTTGATATTCTGCATATTTCACAACATGCCAGCTCCTTGGTTATTG
AGGATGAAAGCAAAGCTGTTGGCGCATTATATGTTCCTGAGCGGCTGTTTGCAGGTATGACGCGCGCGCCTATGGTGGTC
GTTAATGATCCTCTTGAAATTCGCCTGCAGAGACTCTGTTATGAATACTGCACTTTAATGACGGAAAAGTTTAACCTAGC
ATTAGGAGCTGAGCAGGGGTGGCAGGCTTATGAAAAATATTTACAGAATGGCCTGTACGGTATTAGAAAACGCTTGGGAA
CAGAAAAGTTTAAGGTAATGAATACTGTTTTGGAGGCCGCACTCAAGCAGCAGAAAAATACCGGGAGCGTCGAGGGGCAC
CTTAACTGGATTGCGTCAATACTAAGGGATTATTACGATCCTATGTACCAATATCAGCTTGAGAAAAAAGCCGACCGAGT
ACAATTTAGGGGCACATTCCAAGAGGTAAAAGAATGGTTAACCGTTAACACAAAATAA

Upstream 100 bases:

>100_bases
GCCAAAAACAGTGGTGTAAAGTTATTTCAGATTGGAAAAATAGAGTCAAAAAACGCTCAGCAACCCGTTATTTCAGTGTT
ATAAAATGAGTGAATTAAAA

Downstream 100 bases:

>100_bases
GCGGCTTTCGGCTCGAAGCTCGCAGTTCGTCGCTCACAGCTTTTAATCGAATGATCTATTTTACCGCTATGCTATGATAC
TTTTATTCATAAAATGTAAG

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MQQSDLQEQQLYRSLFLLKTPLIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKEGQAAAITLGHQLVASDIQNR
IRKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGVDINIVPGGYKALRRYLINVIDQASEKKLMIVGGNTGCGKTLLI
QALDNGLDIEGRANHRGSSFGKQVTEQPRQISYENQLAVDILHISQHASSLVIEDESKAVGALYVPERLFAGMTRAPMVV
VNDPLEIRLQRLCYEYCTLMTEKFNLALGAEQGWQAYEKYLQNGLYGIRKRLGTEKFKVMNTVLEAALKQQKNTGSVEGH
LNWIASILRDYYDPMYQYQLEKKADRVQFRGTFQEVKEWLTVNTK

Sequences:

>Translated_365_residues
MQQSDLQEQQLYRSLFLLKTPLIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKEGQAAAITLGHQLVASDIQNR
IRKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGVDINIVPGGYKALRRYLINVIDQASEKKLMIVGGNTGCGKTLLI
QALDNGLDIEGRANHRGSSFGKQVTEQPRQISYENQLAVDILHISQHASSLVIEDESKAVGALYVPERLFAGMTRAPMVV
VNDPLEIRLQRLCYEYCTLMTEKFNLALGAEQGWQAYEKYLQNGLYGIRKRLGTEKFKVMNTVLEAALKQQKNTGSVEGH
LNWIASILRDYYDPMYQYQLEKKADRVQFRGTFQEVKEWLTVNTK
>Mature_365_residues
MQQSDLQEQQLYRSLFLLKTPLIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKEGQAAAITLGHQLVASDIQNR
IRKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGVDINIVPGGYKALRRYLINVIDQASEKKLMIVGGNTGCGKTLLI
QALDNGLDIEGRANHRGSSFGKQVTEQPRQISYENQLAVDILHISQHASSLVIEDESKAVGALYVPERLFAGMTRAPMVV
VNDPLEIRLQRLCYEYCTLMTEKFNLALGAEQGWQAYEKYLQNGLYGIRKRLGTEKFKVMNTVLEAALKQQKNTGSVEGH
LNWIASILRDYYDPMYQYQLEKKADRVQFRGTFQEVKEWLTVNTK

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Escherichia coli, GI1786712, Length=355, Percent_Identity=48.169014084507, Blast_Score=343, Evalue=1e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SELU_PSYIN (A1SRN6)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941750.1
- ProteinModelPortal:   A1SRN6
- STRING:   A1SRN6
- GeneID:   4624536
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0285
- eggNOG:   COG2603
- HOGENOM:   HBG452364
- OMA:   NLPLMND
- PhylomeDB:   A1SRN6
- ProtClustDB:   PRK11784
- BioCyc:   PING357804:PING_0285-MONOMER
- HAMAP:   MF_01622
- InterPro:   IPR001763
- InterPro:   IPR017582
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450
- TIGRFAMs:   TIGR03167

Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 41565; Mature: 41565

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50206 RHODANESE_3

Important sites: ACT_SITE 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQSDLQEQQLYRSLFLLKTPLIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKE
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
GQAAAITLGHQLVASDIQNRIRKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGVDIN
CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEE
IVPGGYKALRRYLINVIDQASEKKLMIVGGNTGCGKTLLIQALDNGLDIEGRANHRGSSF
EECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH
GKQVTEQPRQISYENQLAVDILHISQHASSLVIEDESKAVGALYVPERLFAGMTRAPMVV
HHHHHCCHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHCCCCCCCEEE
VNDPLEIRLQRLCYEYCTLMTEKFNLALGAEQGWQAYEKYLQNGLYGIRKRLGTEKFKVM
ECCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
NTVLEAALKQQKNTGSVEGHLNWIASILRDYYDPMYQYQLEKKADRVQFRGTFQEVKEWL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVNTK
CCCCC
>Mature Secondary Structure
MQQSDLQEQQLYRSLFLLKTPLIDLRAPVEFAQGAFPESCNLPLMTDNEREQVGTCYKKE
CCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
GQAAAITLGHQLVASDIQNRIRKWAQFKEENPTAWLYCFRGGLRSRLSAQFLKDHGVDIN
CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEE
IVPGGYKALRRYLINVIDQASEKKLMIVGGNTGCGKTLLIQALDNGLDIEGRANHRGSSF
EECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH
GKQVTEQPRQISYENQLAVDILHISQHASSLVIEDESKAVGALYVPERLFAGMTRAPMVV
HHHHHCCHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEECHHHHHCCCCCCCEEE
VNDPLEIRLQRLCYEYCTLMTEKFNLALGAEQGWQAYEKYLQNGLYGIRKRLGTEKFKVM
ECCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
NTVLEAALKQQKNTGSVEGHLNWIASILRDYYDPMYQYQLEKKADRVQFRGTFQEVKEWL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVNTK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA