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The map label for this gene is rpe [H]

Identifier: 119943954

GI number: 119943954

Start: 217676

End: 218344

Strand: Direct

Name: rpe [H]

Synonym: Ping_0167

Alternate gene names: 119943954

Gene position: 217676-218344 (Clockwise)

Preceding gene: 119943953

Following gene: 119943955

Centisome position: 4.77

GC content: 40.21

Gene sequence:

>669_bases
ATGACCGATTATTTAATTGCCCCTTCAATCCTTTCTGCTGATTTTGCACGGTTGGGGGAAGATGTTGAAAAAGTATTAGA
CGCTGGTGCTGATGTAGTGCATTTTGACGTAATGGATAATCACTACGTGCCTAATTTAACCATTGGTCCGATGGTTTGTA
AGGCCTTACGAGACTATGGTATTACAGCGCCAATCGATGTACATCTTATGGTAAAACCGGTCGATACTATGATAGTTGAG
TTTGCAAAAGCAGGCGCATCGATTATTACCTTTCATCCTGAAGCCTCTGATCATGTGGATCGCTCCTTACAGTTAATTAA
AGAACATGGTTGTAAAGCGGGTTTAGTGTTAAATCCAGCTACTTCATTAGAAGTATTAACCCATGTTATGGATAAACTCG
ACGTGGTGTTATTAATGTCGGTAAATCCAGGTTTTGGTGGCCAATCATTTATTCCGCACACCCTTGAAAAATTACGTCAG
GTCAAAAAATTGATCACTACCAGCGGCCGCGATATTCGTTTACAGGTTGATGGTGGTGTTAAAACTGACAATATTAAAGA
AATCGCAGAGGCAGGTGCAGATATGTTTGTGTCTGGCTCCGCCATTTTTAATCAGCCTGATTATAAGGTTGTCATTGATA
AAATGCGCGGTGAGTTAGCTAATATTTAA

Upstream 100 bases:

>100_bases
AAAACTAACAACAATCATCTTGAATAGAGCCAATAAAAAATAGTTTGTTTGCTTTTGCTTCGGTAGAATACGCATTCACT
TTAGCAAACGGAAACCTATC

Downstream 100 bases:

>100_bases
GGATAGAAAAATGACTAAACCAATAGTTTTAAGCGGTTGCCAGCCTTCGGGATCGTTAACCATAGGCAACTATATGGGCG
CGTTGCGTCAATGGGTTGAG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTDYLIAPSILSADFARLGEDVEKVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITAPIDVHLMVKPVDTMIVE
FAKAGASIITFHPEASDHVDRSLQLIKEHGCKAGLVLNPATSLEVLTHVMDKLDVVLLMSVNPGFGGQSFIPHTLEKLRQ
VKKLITTSGRDIRLQVDGGVKTDNIKEIAEAGADMFVSGSAIFNQPDYKVVIDKMRGELANI

Sequences:

>Translated_222_residues
MTDYLIAPSILSADFARLGEDVEKVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITAPIDVHLMVKPVDTMIVE
FAKAGASIITFHPEASDHVDRSLQLIKEHGCKAGLVLNPATSLEVLTHVMDKLDVVLLMSVNPGFGGQSFIPHTLEKLRQ
VKKLITTSGRDIRLQVDGGVKTDNIKEIAEAGADMFVSGSAIFNQPDYKVVIDKMRGELANI
>Mature_221_residues
TDYLIAPSILSADFARLGEDVEKVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITAPIDVHLMVKPVDTMIVEF
AKAGASIITFHPEASDHVDRSLQLIKEHGCKAGLVLNPATSLEVLTHVMDKLDVVLLMSVNPGFGGQSFIPHTLEKLRQV
KKLITTSGRDIRLQVDGGVKTDNIKEIAEAGADMFVSGSAIFNQPDYKVVIDKMRGELANI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=41.5094339622642, Blast_Score=164, Evalue=4e-41,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=40.0943396226415, Blast_Score=155, Evalue=3e-38,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=34.5238095238095, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=79.2792792792793, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1790523, Length=204, Percent_Identity=37.7450980392157, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1790754, Length=213, Percent_Identity=28.6384976525822, Blast_Score=91, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=42.5925925925926, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=38.1974248927039, Blast_Score=160, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=40.7582938388626, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24165; Mature: 24034

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYLIAPSILSADFARLGEDVEKVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDTMIVEFAKAGASIITFHPEASDHVDRSLQLIKEHGCKAGLVLNPA
CCCCEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC
TSLEVLTHVMDKLDVVLLMSVNPGFGGQSFIPHTLEKLRQVKKLITTSGRDIRLQVDGGV
HHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KTDNIKEIAEAGADMFVSGSAIFNQPDYKVVIDKMRGELANI
CCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDYLIAPSILSADFARLGEDVEKVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDTMIVEFAKAGASIITFHPEASDHVDRSLQLIKEHGCKAGLVLNPA
CCCCEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC
TSLEVLTHVMDKLDVVLLMSVNPGFGGQSFIPHTLEKLRQVKKLITTSGRDIRLQVDGGV
HHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KTDNIKEIAEAGADMFVSGSAIFNQPDYKVVIDKMRGELANI
CCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]