Click here to switch to the map view.

The map label for this gene is scoP [H]

Identifier: 119943902

GI number: 119943902

Start: 140766

End: 141404

Strand: Direct

Name: scoP [H]

Synonym: Ping_0109

Alternate gene names: 119943902

Gene position: 140766-141404 (Clockwise)

Preceding gene: 119943901

Following gene: 119943903

Centisome position: 3.09

GC content: 35.37

Gene sequence:

>639_bases
ATGAAAAAAATATTACTCTTTATAATGCCGTTCTTTCTGTTGTTCTTTCTATTATTAGGACGAGCACAGTTTAAAAATGA
CTTAACTCAGAATGAATCTTTAATTTTATTTAAAGAAGGTAAAAGTTTAATCGATTTTTCCTTTGATGTGGCAGGAGGTG
AACATTTTACTAATCAAGATTTACAAGGAAAATGGACACTTTTCTTTATTGGTTACACTTTTTGTCCTGATATCTGTCCA
ACGACCTTAGCGCATCTTGATAGTGTTTACCCAAAATTAACAGCACAACCCTATGACGATATACAAATTGTATTTGTCTC
GGTTGATCCAAACCGTGATAAAGCCGAGGAATTAGCGGAATATGTACATTACTTTAATTCCGAATTTATAGGTGTGACGA
GTACGCACAAACAGCTATGGCCTGTTGTACAAAATTTAGGGTTGATTTACAGCATTGTGGACCAGGGAGTGGGAGATCCC
TATTATTTGGTGGATCACAGTGCTTCAATTGTATTAATTAATCCCAAAGGTGAGCATCACGCCTCTTTTCAAGCGACAAT
AAATGCAGAAGGCATCTTCAGTGTGAAGATGGACTTAATGGTAGAAAACATCCATCAAATGTATAAAAACTGGCATTAA

Upstream 100 bases:

>100_bases
ATGTAATGTCAGCTGTTTTATTTACAGTCTGGCTGTAGTATGAATTGAGCACATTTACCCTCTTTAGATAAGATGATTTT
TAATTTAACGGGTTATTGAA

Downstream 100 bases:

>100_bases
AGCAAATCCACTGGGTAAGTGGTTTATCTTTCTAGCATTGAGTTTATGGATATAATTTTAATCTGAGTGATGCGGATAGC
TGTTTTTATCTTTGCATGAG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKKILLFIMPFFLLFFLLLGRAQFKNDLTQNESLILFKEGKSLIDFSFDVAGGEHFTNQDLQGKWTLFFIGYTFCPDICP
TTLAHLDSVYPKLTAQPYDDIQIVFVSVDPNRDKAEELAEYVHYFNSEFIGVTSTHKQLWPVVQNLGLIYSIVDQGVGDP
YYLVDHSASIVLINPKGEHHASFQATINAEGIFSVKMDLMVENIHQMYKNWH

Sequences:

>Translated_212_residues
MKKILLFIMPFFLLFFLLLGRAQFKNDLTQNESLILFKEGKSLIDFSFDVAGGEHFTNQDLQGKWTLFFIGYTFCPDICP
TTLAHLDSVYPKLTAQPYDDIQIVFVSVDPNRDKAEELAEYVHYFNSEFIGVTSTHKQLWPVVQNLGLIYSIVDQGVGDP
YYLVDHSASIVLINPKGEHHASFQATINAEGIFSVKMDLMVENIHQMYKNWH
>Mature_212_residues
MKKILLFIMPFFLLFFLLLGRAQFKNDLTQNESLILFKEGKSLIDFSFDVAGGEHFTNQDLQGKWTLFFIGYTFCPDICP
TTLAHLDSVYPKLTAQPYDDIQIVFVSVDPNRDKAEELAEYVHYFNSEFIGVTSTHKQLWPVVQNLGLIYSIVDQGVGDP
YYLVDHSASIVLINPKGEHHASFQATINAEGIFSVKMDLMVENIHQMYKNWH

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=173, Percent_Identity=32.9479768786127, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182722, Length=173, Percent_Identity=32.9479768786127, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI281182716, Length=173, Percent_Identity=32.9479768786127, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI153791313, Length=173, Percent_Identity=32.9479768786127, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4759068, Length=142, Percent_Identity=34.5070422535211, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17531419, Length=163, Percent_Identity=31.9018404907975, Blast_Score=83, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6319498, Length=137, Percent_Identity=35.036496350365, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6319511, Length=126, Percent_Identity=30.952380952381, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19920710, Length=142, Percent_Identity=34.5070422535211, Blast_Score=91, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24320; Mature: 24320

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLFIMPFFLLFFLLLGRAQFKNDLTQNESLILFKEGKSLIDFSFDVAGGEHFTNQD
CCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC
LQGKWTLFFIGYTFCPDICPTTLAHLDSVYPKLTAQPYDDIQIVFVSVDPNRDKAEELAE
CCCCEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHH
YVHYFNSEFIGVTSTHKQLWPVVQNLGLIYSIVDQGVGDPYYLVDHSASIVLINPKGEHH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCC
ASFQATINAEGIFSVKMDLMVENIHQMYKNWH
CEEEEEECCCEEEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILLFIMPFFLLFFLLLGRAQFKNDLTQNESLILFKEGKSLIDFSFDVAGGEHFTNQD
CCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCC
LQGKWTLFFIGYTFCPDICPTTLAHLDSVYPKLTAQPYDDIQIVFVSVDPNRDKAEELAE
CCCCEEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHH
YVHYFNSEFIGVTSTHKQLWPVVQNLGLIYSIVDQGVGDPYYLVDHSASIVLINPKGEHH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCC
ASFQATINAEGIFSVKMDLMVENIHQMYKNWH
CEEEEEECCCEEEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]