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The map label for this gene is ydeA [H]

Identifier: 119899919

GI number: 119899919

Start: 3980888

End: 3982096

Strand: Direct

Name: ydeA [H]

Synonym: azo3630

Alternate gene names: 119899919

Gene position: 3980888-3982096 (Clockwise)

Preceding gene: 119899917

Following gene: 119899920

Centisome position: 90.97

GC content: 71.13

Gene sequence:

>1209_bases
ATGCCACTCGCCTTGCTGGCGCTCACTTTGAGCGCCTTCGCCATCGGCACGACGGAGTTCGTCATCGTCGGCCTCATTCC
CACCATCGCCGCCGACCTCGGCGTCAGCCTGCCGTCGGCGGGCCTGCTGGTCAGCCTCTACGCGCTCGGCGTCGCCGTCG
GCGCGCCGCTGCTCACCGCGCTCACCGGCCGCTTGCCGCGCAAACAGTTGCTGCTCGGGCTGATGGCGCTGTTCACCGTC
GGCAACCTGCTCGCCTGGCAGGCGCCGGGCTACGAATCGCTGGTCGCGGCGCGCATCGTCACCGGGCTGGCGCACGGGGT
GTTCTTCTCGATCGGCTCGACCATCGCCACCGGGCTGGTGGCGAAGGAGAAGGCGGCAAGCGCGATCGCGACGATGTTCT
CGGGCCTTACCGTGGCACTGGTCACCGGCGTTCCGCTGGGCACCTTCATCGGCCAGCACTTCGGCTGGCGCGAGACCTTC
CTGGCGGTGTCGCTGCTCGGCGTGCTCGCCTTCATCGGCAGCCTGATCTTCGTGCCGCGCGACATCCGCCACACGCCGCC
GGCCTCGCTGCTGCGCCAGCTGGCGGTGCTGAAGGCGCCGCGCCTGCTGCTGGTGTATGCGATGACGGCGGTGGGCTACG
GCGGCTCCTTCGTCGCCTTCACCTTCCTCGCGCCCATCCTGCAGCAGATCAGCGGCTTCCCGGCCGGCAGCGTCAGCCTG
GTGCTGCTGGTGTATGGCGTATCGGTGGCGGTGGGCAACATCTGGGGCGGCAGGCTGGCCGACCGCCGTGGCCCGATCGG
CGCGCTCAAGCTGATTTTCCTGCTGCTCGCCGCGGTGCTGCTGGTGCTGAGCGTGACCGCCGCCAACCCGTGGCTGGCCG
TCGCCACCGTGCTGCTGTGGGGCGCGGTTGCCTTCGGCAACGTGCCCGGCCTGCAGGTGTATGTGGTGCAGCAGGCCGAA
CGCCACACCCCGCATGCGGTGGACGTGGCCTCGGGCCTCAACATCGCCGCCTTCAACCTCGGCATCGCCGGCGGCGCCTG
GGGCGGCGGACTGATCGTCGCCCATGTCGGCCTCATCCACACCGCCTGGATCGGCGCGCTGGTGGTGCTGATCGCCTACG
CCCTCACCGCCTGGAGCGGCCGGCTGGACCGCCGCGACCCCGACTACGACGAACTCGCCCCGGCCCCCGCTGCCGCGGCC
GCCCCCTGA

Upstream 100 bases:

>100_bases
TGTTGACGCTCCGGCAAGTATCTTTGGCTTCAGACCCGGTTTTTCTGCATGAGTCTGGCGCGGAAACTGCGCTCCTGCAA
ACCCCAACCGGAGTCTTCCC

Downstream 100 bases:

>100_bases
TCACCACAAACAGGAGCACCCCATGTCCATCCCCATGCCCGCCATCGGCCTTGGCACCTTCCGCCTGCAGGGCCAGACCG
TGATCGACTCGGTCCGCAGC

Product: putative transmembrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MPLALLALTLSAFAIGTTEFVIVGLIPTIAADLGVSLPSAGLLVSLYALGVAVGAPLLTALTGRLPRKQLLLGLMALFTV
GNLLAWQAPGYESLVAARIVTGLAHGVFFSIGSTIATGLVAKEKAASAIATMFSGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVLAFIGSLIFVPRDIRHTPPASLLRQLAVLKAPRLLLVYAMTAVGYGGSFVAFTFLAPILQQISGFPAGSVSL
VLLVYGVSVAVGNIWGGRLADRRGPIGALKLIFLLLAAVLLVLSVTAANPWLAVATVLLWGAVAFGNVPGLQVYVVQQAE
RHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVAHVGLIHTAWIGALVVLIAYALTAWSGRLDRRDPDYDELAPAPAAAA
AP

Sequences:

>Translated_402_residues
MPLALLALTLSAFAIGTTEFVIVGLIPTIAADLGVSLPSAGLLVSLYALGVAVGAPLLTALTGRLPRKQLLLGLMALFTV
GNLLAWQAPGYESLVAARIVTGLAHGVFFSIGSTIATGLVAKEKAASAIATMFSGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVLAFIGSLIFVPRDIRHTPPASLLRQLAVLKAPRLLLVYAMTAVGYGGSFVAFTFLAPILQQISGFPAGSVSL
VLLVYGVSVAVGNIWGGRLADRRGPIGALKLIFLLLAAVLLVLSVTAANPWLAVATVLLWGAVAFGNVPGLQVYVVQQAE
RHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVAHVGLIHTAWIGALVVLIAYALTAWSGRLDRRDPDYDELAPAPAAAA
AP
>Mature_401_residues
PLALLALTLSAFAIGTTEFVIVGLIPTIAADLGVSLPSAGLLVSLYALGVAVGAPLLTALTGRLPRKQLLLGLMALFTVG
NLLAWQAPGYESLVAARIVTGLAHGVFFSIGSTIATGLVAKEKAASAIATMFSGLTVALVTGVPLGTFIGQHFGWRETFL
AVSLLGVLAFIGSLIFVPRDIRHTPPASLLRQLAVLKAPRLLLVYAMTAVGYGGSFVAFTFLAPILQQISGFPAGSVSLV
LLVYGVSVAVGNIWGGRLADRRGPIGALKLIFLLLAAVLLVLSVTAANPWLAVATVLLWGAVAFGNVPGLQVYVVQQAER
HTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVAHVGLIHTAWIGALVVLIAYALTAWSGRLDRRDPDYDELAPAPAAAAA
P

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=334, Percent_Identity=42.814371257485, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1786595, Length=390, Percent_Identity=32.8205128205128, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1787808, Length=390, Percent_Identity=31.025641025641, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693198, Length=364, Percent_Identity=27.1978021978022, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41319; Mature: 41187

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
PLALLALTLSAFAIGTTEFVIVGLIPTIAADLGVSLPSAGLLVSLYALGVAVGAPLLTA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLLGLMALFTVGNLLAWQAPGYESLVAARIVTGLAHGVFFSIGSTIATGLV
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIATMFSGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVLAFIGSLIFVPR
HHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
DIRHTPPASLLRQLAVLKAPRLLLVYAMTAVGYGGSFVAFTFLAPILQQISGFPAGSVSL
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
VLLVYGVSVAVGNIWGGRLADRRGPIGALKLIFLLLAAVLLVLSVTAANPWLAVATVLLW
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GAVAFGNVPGLQVYVVQQAERHTPHAVDVASGLNIAAFNLGIAGGAWGGGLIVAHVGLIH
HHHHHCCCCCEEEEEEEHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
TAWIGALVVLIAYALTAWSGRLDRRDPDYDELAPAPAAAAAP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]