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The map label for this gene is ureD

Identifier: 119899797

GI number: 119899797

Start: 3849059

End: 3849916

Strand: Reverse

Name: ureD

Synonym: azo3508

Alternate gene names: 119899797

Gene position: 3849916-3849059 (Counterclockwise)

Preceding gene: 119899798

Following gene: 119899796

Centisome position: 87.98

GC content: 74.48

Gene sequence:

>858_bases
ATGAATGCAGTCAGCGATCTGCGCGCCTTGCATGCTGCCCAGCCGGGCTGGCAGGCGGCGCTGTCCCTTGGTTTCGAACG
CCGCGGCGCGCGCACCGTGCTCGCCACCCGCCGCCACGTCGGTCCGCTGGTGGTGCAGCGCGCGCTGTACCCGGAGGGCG
ACGGCGTCTGCCATGCCATCGTGGTGCATCCGCCGGCGGGCATCGTCGGCGGCGACGCGCTGCGCATCGACGTCGACCTC
GGCGCCGGCGCCCATGCGCTGCTCACCACGCCGGGCGCCGGCAAGTGGTATCGCAGCGCCGGCGCGCGCGGCAGTCTGGT
CCAGCGCATCGCGGTCGGCGACGGCGCGGTGTGCGAATGGCTGCCGCAGGAAAGCATCGTCTACGACGGCGCTGCCGGCG
ATCTCGCCACCGAGGTGGACATTGCCGGCGACGGCGTCTTCATCGGCAGCGAGATGACCTGCTTCGGCCGCAGTGGTGCG
GGCGAGCGCTACACCCGCGGGGATTTCGCGATGCGCACCCGCATCCGCCGCGACGGCCGCACGCTGTGGCTGGAGCGCGG
CCGCGTCGAAGGCGGCGGCGCGCTGCTCGATTCGCCGGTCGGGCTGGCCGGGTGGCCGGTAACGGCCACCCTGCTGGTGG
CGGCGAAAACGGTGGACGCAGCGCTGCTCGAAGCCTGCCGTGAGGTCCCGGCGGAGGCCGGCGAGGGCGCGGCGACGCTG
CTGCCCGGCCTGCTGGTGGCGCGCTACCGCGGCCCCGCCTGCGAACCCGGGCGCAACTGGTTCAACCGGCTGTGGACGCT
GCTGCGTCCGCCGCTCGCCGGCCGCGCGGCGACGCTGCCGCGCATCTGGCACACCTGA

Upstream 100 bases:

>100_bases
ACGGGCCAAGGTGCCCCGGCGAGCGCGGCGATATCGCTTTCGAATCAATCGTGCGGCATCGTCCACCGGTTCTGGAACAG
CGCTTGCTAACGATTTCGAC

Downstream 100 bases:

>100_bases
CCCGGCGCGGGCGGCCGGCCCGCGCGCACAAGAGGAACAACAATGGAACTGACGCCACGCGAGAAGGACAAGCTGCTGAT
CTTCACCGCCGGCCTGCTGG

Product: putative urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNAVSDLRALHAAQPGWQAALSLGFERRGARTVLATRRHVGPLVVQRALYPEGDGVCHAIVVHPPAGIVGGDALRIDVDL
GAGAHALLTTPGAGKWYRSAGARGSLVQRIAVGDGAVCEWLPQESIVYDGAAGDLATEVDIAGDGVFIGSEMTCFGRSGA
GERYTRGDFAMRTRIRRDGRTLWLERGRVEGGGALLDSPVGLAGWPVTATLLVAAKTVDAALLEACREVPAEAGEGAATL
LPGLLVARYRGPACEPGRNWFNRLWTLLRPPLAGRAATLPRIWHT

Sequences:

>Translated_285_residues
MNAVSDLRALHAAQPGWQAALSLGFERRGARTVLATRRHVGPLVVQRALYPEGDGVCHAIVVHPPAGIVGGDALRIDVDL
GAGAHALLTTPGAGKWYRSAGARGSLVQRIAVGDGAVCEWLPQESIVYDGAAGDLATEVDIAGDGVFIGSEMTCFGRSGA
GERYTRGDFAMRTRIRRDGRTLWLERGRVEGGGALLDSPVGLAGWPVTATLLVAAKTVDAALLEACREVPAEAGEGAATL
LPGLLVARYRGPACEPGRNWFNRLWTLLRPPLAGRAATLPRIWHT
>Mature_285_residues
MNAVSDLRALHAAQPGWQAALSLGFERRGARTVLATRRHVGPLVVQRALYPEGDGVCHAIVVHPPAGIVGGDALRIDVDL
GAGAHALLTTPGAGKWYRSAGARGSLVQRIAVGDGAVCEWLPQESIVYDGAAGDLATEVDIAGDGVFIGSEMTCFGRSGA
GERYTRGDFAMRTRIRRDGRTLWLERGRVEGGGALLDSPVGLAGWPVTATLLVAAKTVDAALLEACREVPAEAGEGAATL
LPGLLVARYRGPACEPGRNWFNRLWTLLRPPLAGRAATLPRIWHT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_AZOSB (A1KBB8)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_935010.1
- STRING:   A1KBB8
- GeneID:   4610071
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo3508
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK768359
- BioCyc:   ASP62928:AZO3508-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 30049; Mature: 30049

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVSDLRALHAAQPGWQAALSLGFERRGARTVLATRRHVGPLVVQRALYPEGDGVCHAI
CCHHHHHHHHHHCCCCHHHHHHHCHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCEEEE
VVHPPAGIVGGDALRIDVDLGAGAHALLTTPGAGKWYRSAGARGSLVQRIAVGDGAVCEW
EEECCCCEECCCEEEEEEECCCCCEEEEECCCCCHHHHHCCCCHHHHHHHHCCCCHHHHC
LPQESIVYDGAAGDLATEVDIAGDGVFIGSEMTCFGRSGAGERYTRGDFAMRTRIRRDGR
CCCCCEEECCCCCCCEEEEEECCCCEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHCCC
TLWLERGRVEGGGALLDSPVGLAGWPVTATLLVAAKTVDAALLEACREVPAEAGEGAATL
EEEEECCEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LPGLLVARYRGPACEPGRNWFNRLWTLLRPPLAGRAATLPRIWHT
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MNAVSDLRALHAAQPGWQAALSLGFERRGARTVLATRRHVGPLVVQRALYPEGDGVCHAI
CCHHHHHHHHHHCCCCHHHHHHHCHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCEEEE
VVHPPAGIVGGDALRIDVDLGAGAHALLTTPGAGKWYRSAGARGSLVQRIAVGDGAVCEW
EEECCCCEECCCEEEEEEECCCCCEEEEECCCCCHHHHHCCCCHHHHHHHHCCCCHHHHC
LPQESIVYDGAAGDLATEVDIAGDGVFIGSEMTCFGRSGAGERYTRGDFAMRTRIRRDGR
CCCCCEEECCCCCCCEEEEEECCCCEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHCCC
TLWLERGRVEGGGALLDSPVGLAGWPVTATLLVAAKTVDAALLEACREVPAEAGEGAATL
EEEEECCEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LPGLLVARYRGPACEPGRNWFNRLWTLLRPPLAGRAATLPRIWHT
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA