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The map label for this gene is yfdE [H]

Identifier: 119899729

GI number: 119899729

Start: 3772274

End: 3773446

Strand: Reverse

Name: yfdE [H]

Synonym: azo3440

Alternate gene names: 119899729

Gene position: 3773446-3772274 (Counterclockwise)

Preceding gene: 119899730

Following gene: 119899725

Centisome position: 86.23

GC content: 70.08

Gene sequence:

>1173_bases
GTGGGTGACAGCGCCCGTTCCAAGCCGCTCGCCGGCGTGCGTGTGCTCGACCTCACACGCCTGCTGCCCGGGCCGCTCGC
CACCCAGCATCTGGCCGACTACGGCGCCGACGTCATCAAGGTGGAGGACACCGGGGCCGGCGACTACGCCCGCACGATGG
GGCCGGGCAACGCAGCGGGCAGCTACTTCCATCAACTCGTGAATCGCAACAAGCGCAGCCTGCGGCTGGACCTGAAGCAG
GCCGAAGGGCGGACGCTGATGCTGCGTCTGGTCGAGCACGCCGACGTGCTGGTGGAGGGGTTCCGGCCGGGCGCGATGGC
GCGTCTCGGGCTCGGCTACGAAACCCTGGCCGCGCTGAATCCGCGCCTCGTCTATTGCAGCATCAGCGGCTATGGCCAGC
AGGGGCCGTACGCGGAGCGGGCCGGGCACGACATCAACTACATCGGCTACGCGGGGCTACTCGATCAGATCGGCTGTCGT
GGCGGCGCGCCGGCGCTGCCCAACCTGCAGATCGGCGACCTGTTGGGCGGCACCATGGCCGCCGCGATGGGGATCCTGGT
GGCACTGGTCGACGCCCGCAGCACCGGGCGGGGCCGCCACGTCGACGTGGCAATGACCGATGCGGTGCTCGCGCATGCGA
TCTTTCCGCTCGCCGAGGTGCTCGCCCGCGGCACCGTGCGGGATCGCGGAGATGACCTGCTGACCGGTGGGGTGCCGTGT
TACGGCGTTTATGAGACCGCGGATGGCCGCCACATGGCGGTGGGCGCGCTGGAGGAGAAGTTCTGGCACCTGTTGTGCGA
CACGCTGGGCCGGCCAGATCTCAAACCCGCGCATCTCGCGCGGGATGCCGCCGGCGAGCGCGCCCGCGCCGAGCTTGCCG
CGGTCTTCCGCACCCATTCGCAGGCCCACTGGACGGCCCTGTTCGGCACGGTGGACTGCTGCGTCACCCCGGTATTGCGG
CTTGAAGAGGCCTTGTCGGACGAGCAGGTCCGGCGCGCCGTGGTCGAGGCCAACGGGCTGCGCCAGTTCGCGCCGCCGGT
GGCCATGTCGGAGTTTTCACTCGGCCAACCCGGTCCTGCACCGGCGCAGGGCGCGCACAGCGCAGAGATCCTGGCCGAAC
TCGGGCTGGATAGCGGGGAAATCGAAACCTTGCGGGCGCGCGGTGTGATCTGA

Upstream 100 bases:

>100_bases
GTGCTTCCCGGGTTCGTTGTGTGTGGGGGATACCGGCCCGGTTCCGGGCCGGTTTTTTTCCGCACCGTATCCCGGCGCCC
AAGCAGGGTCCGCCGCTGCC

Downstream 100 bases:

>100_bases
ACGCCCGGCGGGGCGCTCAGCCGCGCGCGGCGTCTTCGCGCGCCGTGGCCGGCGCGGCGCCTGCGGCCGGTTGAGCCCCG
GCTTGTGCCGCCTGGGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MGDSARSKPLAGVRVLDLTRLLPGPLATQHLADYGADVIKVEDTGAGDYARTMGPGNAAGSYFHQLVNRNKRSLRLDLKQ
AEGRTLMLRLVEHADVLVEGFRPGAMARLGLGYETLAALNPRLVYCSISGYGQQGPYAERAGHDINYIGYAGLLDQIGCR
GGAPALPNLQIGDLLGGTMAAAMGILVALVDARSTGRGRHVDVAMTDAVLAHAIFPLAEVLARGTVRDRGDDLLTGGVPC
YGVYETADGRHMAVGALEEKFWHLLCDTLGRPDLKPAHLARDAAGERARAELAAVFRTHSQAHWTALFGTVDCCVTPVLR
LEEALSDEQVRRAVVEANGLRQFAPPVAMSEFSLGQPGPAPAQGAHSAEILAELGLDSGEIETLRARGVI

Sequences:

>Translated_390_residues
MGDSARSKPLAGVRVLDLTRLLPGPLATQHLADYGADVIKVEDTGAGDYARTMGPGNAAGSYFHQLVNRNKRSLRLDLKQ
AEGRTLMLRLVEHADVLVEGFRPGAMARLGLGYETLAALNPRLVYCSISGYGQQGPYAERAGHDINYIGYAGLLDQIGCR
GGAPALPNLQIGDLLGGTMAAAMGILVALVDARSTGRGRHVDVAMTDAVLAHAIFPLAEVLARGTVRDRGDDLLTGGVPC
YGVYETADGRHMAVGALEEKFWHLLCDTLGRPDLKPAHLARDAAGERARAELAAVFRTHSQAHWTALFGTVDCCVTPVLR
LEEALSDEQVRRAVVEANGLRQFAPPVAMSEFSLGQPGPAPAQGAHSAEILAELGLDSGEIETLRARGVI
>Mature_389_residues
GDSARSKPLAGVRVLDLTRLLPGPLATQHLADYGADVIKVEDTGAGDYARTMGPGNAAGSYFHQLVNRNKRSLRLDLKQA
EGRTLMLRLVEHADVLVEGFRPGAMARLGLGYETLAALNPRLVYCSISGYGQQGPYAERAGHDINYIGYAGLLDQIGCRG
GAPALPNLQIGDLLGGTMAAAMGILVALVDARSTGRGRHVDVAMTDAVLAHAIFPLAEVLARGTVRDRGDDLLTGGVPCY
GVYETADGRHMAVGALEEKFWHLLCDTLGRPDLKPAHLARDAAGERARAELAAVFRTHSQAHWTALFGTVDCCVTPVLRL
EEALSDEQVRRAVVEANGLRQFAPPVAMSEFSLGQPGPAPAQGAHSAEILAELGLDSGEIETLRARGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=386, Percent_Identity=36.2694300518135, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI266456254, Length=386, Percent_Identity=36.2694300518135, Blast_Score=229, Evalue=5e-60,
Organism=Homo sapiens, GI300863128, Length=410, Percent_Identity=32.6829268292683, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI266458393, Length=286, Percent_Identity=38.8111888111888, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI266458397, Length=256, Percent_Identity=40.234375, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863124, Length=436, Percent_Identity=31.1926605504587, Blast_Score=179, Evalue=6e-45,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=30.0248138957816, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI13376042, Length=436, Percent_Identity=28.2110091743119, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=41.8918918918919, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=42.6573426573427, Blast_Score=111, Evalue=1e-24,
Organism=Escherichia coli, GI87082093, Length=357, Percent_Identity=31.6526610644258, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=31.0747663551402, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=27.7227722772277, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI115535051, Length=321, Percent_Identity=33.3333333333333, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI32564160, Length=323, Percent_Identity=33.1269349845201, Blast_Score=154, Evalue=6e-38,
Organism=Drosophila melanogaster, GI24585488, Length=389, Percent_Identity=35.2185089974293, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI24648431, Length=410, Percent_Identity=33.4146341463415, Blast_Score=181, Evalue=6e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41395; Mature: 41264

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSARSKPLAGVRVLDLTRLLPGPLATQHLADYGADVIKVEDTGAGDYARTMGPGNAAG
CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCHHH
SYFHQLVNRNKRSLRLDLKQAEGRTLMLRLVEHADVLVEGFRPGAMARLGLGYETLAALN
HHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCC
PRLVYCSISGYGQQGPYAERAGHDINYIGYAGLLDQIGCRGGAPALPNLQIGDLLGGTMA
CEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AAMGILVALVDARSTGRGRHVDVAMTDAVLAHAIFPLAEVLARGTVRDRGDDLLTGGVPC
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
YGVYETADGRHMAVGALEEKFWHLLCDTLGRPDLKPAHLARDAAGERARAELAAVFRTHS
EEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
QAHWTALFGTVDCCVTPVLRLEEALSDEQVRRAVVEANGLRQFAPPVAMSEFSLGQPGPA
CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCCHHCCCCCCCCCC
PAQGAHSAEILAELGLDSGEIETLRARGVI
CCCCCHHHHHHHHHCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
GDSARSKPLAGVRVLDLTRLLPGPLATQHLADYGADVIKVEDTGAGDYARTMGPGNAAG
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCHHH
SYFHQLVNRNKRSLRLDLKQAEGRTLMLRLVEHADVLVEGFRPGAMARLGLGYETLAALN
HHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCC
PRLVYCSISGYGQQGPYAERAGHDINYIGYAGLLDQIGCRGGAPALPNLQIGDLLGGTMA
CEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AAMGILVALVDARSTGRGRHVDVAMTDAVLAHAIFPLAEVLARGTVRDRGDDLLTGGVPC
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
YGVYETADGRHMAVGALEEKFWHLLCDTLGRPDLKPAHLARDAAGERARAELAAVFRTHS
EEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC
QAHWTALFGTVDCCVTPVLRLEEALSDEQVRRAVVEANGLRQFAPPVAMSEFSLGQPGPA
CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCCHHCCCCCCCCCC
PAQGAHSAEILAELGLDSGEIETLRARGVI
CCCCCHHHHHHHHHCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]