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The map label for this gene is 119899578

Identifier: 119899578

GI number: 119899578

Start: 3627672

End: 3628322

Strand: Direct

Name: 119899578

Synonym: azo3289

Alternate gene names: NA

Gene position: 3627672-3628322 (Clockwise)

Preceding gene: 119899577

Following gene: 119899581

Centisome position: 82.9

GC content: 64.98

Gene sequence:

>651_bases
CTGTACGAATTCGAGGACATCCTGCACAGGGAAAGGGCACGTCCCGACCGGCACGCGGCACGTTGGGCGCACCTACCGAT
CTATCTCGACTCCCCGCTGGCGAGCCGGTTCACCCAGCTCTACCGCGAACTGCAACCATGGTGGGACGATGAAGCGCTCG
CGCGCGTCAGAAGCGGGCGCCAGCCGCTCGGTTTCGACCAACTCGTCGCCATCGACGACCACGAGGACCATCTCGACAAC
GTCCGCCATCTCGCGCGTAGCGGCGAACCCGCCATCGTCATCGCTGCGAGCGGCATGTGCACGGGCGGACGGGTGATGAA
TTACCTCAAGGCGATGCTGCACGACACGCGGCACGACGTGCTCTTTGTGGGTTATCAGGCGGCGGGCACCCCGGGCCACG
CCATCCAGACTTTCGGACCGCGAGGTGGTTACGTCGACCTCGACGGGGAACGCATCCACATCCGCGCGGGCATCCATACG
CTAGGCGGCTACTCCGCTCACGCGGACCAGCGGGACCTGGTGCGGTTCATTACGCGTATGCGCCACCTTCCCACCGAAAT
CCAGTTGATTCACGGTAGCAGCGAGGCAAAAGCCGCCCTCACCGCAGCGCTGCGCAAGGCGACAGAGGAGCGTTGCATCG
TCACGCCCTGA

Upstream 100 bases:

>100_bases
GCGACCGCCGCCTGCGGCTGAAGAAAATCGTGGAGCACGCGCTCGATAACGGGGCACGGTAATCATCCCCGCCTTCAGCA
TTGGACGCAGCCAGGAACTC

Downstream 100 bases:

>100_bases
CCGTAATCCAGGCGCAGGAAACCACTTCCACGCACTTGGAGTGAAAAAAAAAACGGGCGCCGAAGCGCCCGTTTTTGTCA
TCCCTGATTTCGCTGGTAAG

Product: RNA procession exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MYEFEDILHRERARPDRHAARWAHLPIYLDSPLASRFTQLYRELQPWWDDEALARVRSGRQPLGFDQLVAIDDHEDHLDN
VRHLARSGEPAIVIAASGMCTGGRVMNYLKAMLHDTRHDVLFVGYQAAGTPGHAIQTFGPRGGYVDLDGERIHIRAGIHT
LGGYSAHADQRDLVRFITRMRHLPTEIQLIHGSSEAKAALTAALRKATEERCIVTP

Sequences:

>Translated_216_residues
MYEFEDILHRERARPDRHAARWAHLPIYLDSPLASRFTQLYRELQPWWDDEALARVRSGRQPLGFDQLVAIDDHEDHLDN
VRHLARSGEPAIVIAASGMCTGGRVMNYLKAMLHDTRHDVLFVGYQAAGTPGHAIQTFGPRGGYVDLDGERIHIRAGIHT
LGGYSAHADQRDLVRFITRMRHLPTEIQLIHGSSEAKAALTAALRKATEERCIVTP
>Mature_216_residues
MYEFEDILHRERARPDRHAARWAHLPIYLDSPLASRFTQLYRELQPWWDDEALARVRSGRQPLGFDQLVAIDDHEDHLDN
VRHLARSGEPAIVIAASGMCTGGRVMNYLKAMLHDTRHDVLFVGYQAAGTPGHAIQTFGPRGGYVDLDGERIHIRAGIHT
LGGYSAHADQRDLVRFITRMRHLPTEIQLIHGSSEAKAALTAALRKATEERCIVTP

Specific function: Has endoribonuclease activity towards 23S and 16S rRNA (in vitro) [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022712
- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF10996 Beta-Casp; PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 24371; Mature: 24371

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEFEDILHRERARPDRHAARWAHLPIYLDSPLASRFTQLYRELQPWWDDEALARVRSGR
CCCHHHHHHHHHCCCHHHHHHHEECEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
QPLGFDQLVAIDDHEDHLDNVRHLARSGEPAIVIAASGMCTGGRVMNYLKAMLHDTRHDV
CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCE
LFVGYQAAGTPGHAIQTFGPRGGYVDLDGERIHIRAGIHTLGGYSAHADQRDLVRFITRM
EEEEEECCCCCCCEEECCCCCCCEEECCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHH
RHLPTEIQLIHGSSEAKAALTAALRKATEERCIVTP
HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYEFEDILHRERARPDRHAARWAHLPIYLDSPLASRFTQLYRELQPWWDDEALARVRSGR
CCCHHHHHHHHHCCCHHHHHHHEECEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
QPLGFDQLVAIDDHEDHLDNVRHLARSGEPAIVIAASGMCTGGRVMNYLKAMLHDTRHDV
CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCE
LFVGYQAAGTPGHAIQTFGPRGGYVDLDGERIHIRAGIHTLGGYSAHADQRDLVRFITRM
EEEEEECCCCCCCEEECCCCCCCEEECCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHH
RHLPTEIQLIHGSSEAKAALTAALRKATEERCIVTP
HCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA