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The map label for this gene is rbn [C]

Identifier: 119899455

GI number: 119899455

Start: 3473290

End: 3474516

Strand: Direct

Name: rbn [C]

Synonym: azo3165

Alternate gene names: 119899455

Gene position: 3473290-3474516 (Clockwise)

Preceding gene: 119899452

Following gene: 119899457

Centisome position: 79.37

GC content: 70.09

Gene sequence:

>1227_bases
ATGCACTTACACCCCACCCGCGACTTCCTTCGCCTGCTCGGCGAACGCTTCTCCGCAACCCGCTGCCCGCAGGTGGCCGG
CAGCCTCGCATTCACCACCCTGCTCGCCCTGGTGCCGCTGCTCACGGTCGCGATCGGCGTCTTCGGCAATCTGCCCGGCA
TGGACAAACTCGGCGCCTCGCTGAAGGACTTCCTGCTCGAAAACCTGCTGCCGGATCGCGCGGGCCGCATCATCACCACC
TACGCGCTGCAGTTTTCGCAGAAGGCTGCGCGCCTGACGCTCATCGGCACCGCGATGCTGGCGGTGACCGCGCTGATGCT
GCTCGCGACGATCGAGCGCGTGTTCAACCAGATCTGGGGGGTACGGCACCGCCGCCCGCTGCTGATGCGGATCACCGTCT
CGTGGTTCATGCTGACGCTGGGCCCGGTGATCCTGGGCGGGAGCGTGGTGGCGACCGGCTACCTCGTCAGCACCTCGGCC
GAATGGTCGGACCGGCTGCCGTGGATCGGCGAGATCGCCGCGGCAACGCTGCCGCCGCTGCTGCTGGGCGCGCTGTTCAG
CTTCCTGTACTACGCCGTGCCCAACCACCCGGTGCGGCTGCTGCACGCGCTCGCGGGGGGGCTCTGCGCCGCGCTGGTGT
TCCTGCTGATGCAACGCGGCCTGGGACTCTTCATCGCCGGATTTCCGACCTACACGCTGATCTACGGCACCTTCGCGGCG
CTGCCGATCTTCCTGCTGTGGCTCTACCTGTCCTGGACCGTGATCCTGCTCGGCGCGCTGATCACCGCCACGCTGCCCGC
CTTTCTGGAGCGACAGCGCATGCTGCCCGCGTTTCCCGGCGATCGCGCGTGGGCCGCGGTGGAAATGCTCGCGGCACTGG
CCGAAGCGCAATACGACGGCCGCCCGGTCGGCTTCGCCGCGCTCCGCCGCCGCACCAATCTCGCCGAGCACGCCGCCGAG
GCCCTGCTGGAGAGCCTGCGTGAATGCGGCATCGCCAGCCGCACCGAGGGCGGCGACTGGGTGCTCACCCGGGCCGCCTC
CGATATCCGTCTCAGCGCGGTACTGCAGCGCTTCGCGCTCGATCTCACGGCGTGGAGCGCGCTGAGCCCCGGGCGCGGGG
GCCGCATCGTCGCCGAGCGGCTGCGCGAAGGGCTGCAGGCGGCGGACCTCAGCCTCGCCGAACTTGCGGCGGCGAACACC
TCCGCCGGCGCCGTTCAGGTCGGATAG

Upstream 100 bases:

>100_bases
AGCACGAGGATTTCCTGCATGGGGAGGGCGAGCCGATAGAATGGGCGGCATTATAACCACGCGCCTTGCGCGCACCGCCG
CCGCCCCCGGGGCACTTTCG

Downstream 100 bases:

>100_bases
GGGTCGATCTCGTACTGGAAAAGTTCGATGTTCGCCGTCTGCAGATCGAGGCCGAGCGCGCGGCATTGCGCCACGTACAG
GCGCTCGCCCTCCTGCATCA

Product: exoribonuclease II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MHLHPTRDFLRLLGERFSATRCPQVAGSLAFTTLLALVPLLTVAIGVFGNLPGMDKLGASLKDFLLENLLPDRAGRIITT
YALQFSQKAARLTLIGTAMLAVTALMLLATIERVFNQIWGVRHRRPLLMRITVSWFMLTLGPVILGGSVVATGYLVSTSA
EWSDRLPWIGEIAAATLPPLLLGALFSFLYYAVPNHPVRLLHALAGGLCAALVFLLMQRGLGLFIAGFPTYTLIYGTFAA
LPIFLLWLYLSWTVILLGALITATLPAFLERQRMLPAFPGDRAWAAVEMLAALAEAQYDGRPVGFAALRRRTNLAEHAAE
ALLESLRECGIASRTEGGDWVLTRAASDIRLSAVLQRFALDLTAWSALSPGRGGRIVAERLREGLQAADLSLAELAAANT
SAGAVQVG

Sequences:

>Translated_408_residues
MHLHPTRDFLRLLGERFSATRCPQVAGSLAFTTLLALVPLLTVAIGVFGNLPGMDKLGASLKDFLLENLLPDRAGRIITT
YALQFSQKAARLTLIGTAMLAVTALMLLATIERVFNQIWGVRHRRPLLMRITVSWFMLTLGPVILGGSVVATGYLVSTSA
EWSDRLPWIGEIAAATLPPLLLGALFSFLYYAVPNHPVRLLHALAGGLCAALVFLLMQRGLGLFIAGFPTYTLIYGTFAA
LPIFLLWLYLSWTVILLGALITATLPAFLERQRMLPAFPGDRAWAAVEMLAALAEAQYDGRPVGFAALRRRTNLAEHAAE
ALLESLRECGIASRTEGGDWVLTRAASDIRLSAVLQRFALDLTAWSALSPGRGGRIVAERLREGLQAADLSLAELAAANT
SAGAVQVG
>Mature_408_residues
MHLHPTRDFLRLLGERFSATRCPQVAGSLAFTTLLALVPLLTVAIGVFGNLPGMDKLGASLKDFLLENLLPDRAGRIITT
YALQFSQKAARLTLIGTAMLAVTALMLLATIERVFNQIWGVRHRRPLLMRITVSWFMLTLGPVILGGSVVATGYLVSTSA
EWSDRLPWIGEIAAATLPPLLLGALFSFLYYAVPNHPVRLLHALAGGLCAALVFLLMQRGLGLFIAGFPTYTLIYGTFAA
LPIFLLWLYLSWTVILLGALITATLPAFLERQRMLPAFPGDRAWAAVEMLAALAEAQYDGRPVGFAALRRRTNLAEHAAE
ALLESLRECGIASRTEGGDWVLTRAASDIRLSAVLQRFALDLTAWSALSPGRGGRIVAERLREGLQAADLSLAELAAANT
SAGAVQVG

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=36.6037735849057, Blast_Score=165, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3165_AZOSB (A1KAC6)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_934668.1
- STRING:   A1KAC6
- GeneID:   4610113
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo3165
- HOGENOM:   HBG451793
- OMA:   SVMTMMT
- PhylomeDB:   A1KAC6
- ProtClustDB:   CLSK767169
- BioCyc:   ASP62928:AZO3165-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- InterPro:   IPR000944
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN; PF02082 Rrf2

EC number: 3.1.-.- [C]

Molecular weight: Translated: 44056; Mature: 44056

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1dcd0fdc)-; HASH(0x1e86b2e8)-; HASH(0x195bb460)-; HASH(0x1db67b9c)-; HASH(0x1e9074c4)-; HASH(0x1ea489e0)-; HASH(0x1e9996e0)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLHPTRDFLRLLGERFSATRCPQVAGSLAFTTLLALVPLLTVAIGVFGNLPGMDKLGAS
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LKDFLLENLLPDRAGRIITTYALQFSQKAARLTLIGTAMLAVTALMLLATIERVFNQIWG
HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VRHRRPLLMRITVSWFMLTLGPVILGGSVVATGYLVSTSAEWSDRLPWIGEIAAATLPPL
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCHHHCCCCHHHHHHHHHHHH
LLGALFSFLYYAVPNHPVRLLHALAGGLCAALVFLLMQRGLGLFIAGFPTYTLIYGTFAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
LPIFLLWLYLSWTVILLGALITATLPAFLERQRMLPAFPGDRAWAAVEMLAALAEAQYDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
RPVGFAALRRRTNLAEHAAEALLESLRECGIASRTEGGDWVLTRAASDIRLSAVLQRFAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH
DLTAWSALSPGRGGRIVAERLREGLQAADLSLAELAAANTSAGAVQVG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEECH
>Mature Secondary Structure
MHLHPTRDFLRLLGERFSATRCPQVAGSLAFTTLLALVPLLTVAIGVFGNLPGMDKLGAS
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LKDFLLENLLPDRAGRIITTYALQFSQKAARLTLIGTAMLAVTALMLLATIERVFNQIWG
HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VRHRRPLLMRITVSWFMLTLGPVILGGSVVATGYLVSTSAEWSDRLPWIGEIAAATLPPL
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCCHHHCCCCHHHHHHHHHHHH
LLGALFSFLYYAVPNHPVRLLHALAGGLCAALVFLLMQRGLGLFIAGFPTYTLIYGTFAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
LPIFLLWLYLSWTVILLGALITATLPAFLERQRMLPAFPGDRAWAAVEMLAALAEAQYDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
RPVGFAALRRRTNLAEHAAEALLESLRECGIASRTEGGDWVLTRAASDIRLSAVLQRFAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH
DLTAWSALSPGRGGRIVAERLREGLQAADLSLAELAAANTSAGAVQVG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA