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The map label for this gene is ycbB [H]

Identifier: 119899290

GI number: 119899290

Start: 3297392

End: 3299023

Strand: Reverse

Name: ycbB [H]

Synonym: azo3000

Alternate gene names: 119899290

Gene position: 3299023-3297392 (Counterclockwise)

Preceding gene: 119899291

Following gene: 119899289

Centisome position: 75.39

GC content: 73.96

Gene sequence:

>1632_bases
ATGAAAGCTCCCGCCTTGTCCGTGCGCGCCCCCCGCGCGCTTCGCCGCGTGTTCGCCGCCTGGCTGTGCGGCGTTGCGCT
GCTCGCCAGCGCGCCGGCGCAGACTGTCGCCGCGCCGGAGGAGGGCGTGGCGCCGTCGTGGTTCGCGCACGGCCGGCCCG
TGCCCGCCGCGCGGCAGGCGGTGGACATCCTCGCCGCCGCCGCGGCCGAAGGGCTGGACCCCGCGGACTACGACGCCGGG
GCGCTGCGCGCGCAACTGGACGCGCTGGGGCGGGGCACCGCGCCGGAAACCCAGGCCGCGTTCGACGCCGCGCTCAGCGC
CGCGATGGCGCGCTATCTGGGTGATGTGCACCGCGGCCGCATCGACCCGCGCAGCGTCCATGCGGCGTACGCCGGCCCCG
CGCCGGAGGCCTTCGACGCCGACGCCTATCTGCGCGCCGCGCTGGCGGAGGACCGGGTGGAAGAGGCCGCGCGCGCGGCG
GTGCCGCCCTTGCCGCTGTATGGCGCGCTGCGCACGGCGCTGGCGCACTACCGGACGCTGGCCGCGGGGGCGGACGCGCA
GGCGGCGTGGTCGCTGCCGCTGCCCTTGCCGCCGCGGCGCAAGCTCGAACCCGGCCAGCCCTATGCCGGCCTCGCCTTGC
TGGCGCGCCGGCTGACGCTGCTCGGCGATCTCGTTGCCGACGTGCCGCTGCCGCCGCGCTACGAAGGCGCGCTGGTGGAT
GCGGTCAAGCGCTTCCAGCTGCGCCACGGCCTGGCGGCGGACGGCGTGGTCGGGCGCGGCACGCTGGCCGAGCTGGAGGT
GGCGCCGGCGGCGCGCGTGCGCCAGATCGAGCTGACCATGGAGCGCCTGCGGTGGACGCCGCTGCTGCAGGCGCCGCGCA
TGATCGTGGTGAACGTGCCGGAGTTCATGCTGCGCGCCTACGAGGTGCGCGACGGCCGCATCGAGGTCGCGGCGCGCATG
AAGGTCATCGTCGGCAAGGCGCTCGATACCCGCACGCCGCTGTTCGCCGAGGACATGCGCTTCATCGAGTTCAGCCCCTA
CTGGAACGTGCCGCCGTCGATCGCGCGCGCCGAGCTGGTGCCGCGCCTGCGCCGCGAACCCGGCTACTGGAACGCGCAGG
GCTTCGAGTTCGTGGCCGGCGACGGCACCGCCAACCCGACGCTGAGCACCGCCGGGCTGGACGCCGTGCTGCGCGGCACG
CTGCGCATCCGCCAGCGCCCGGGGCCGCACAACGCGCTCGGCGACATCAAGTTCGTGTTCCCCAACAACGACAACATCTA
CCTGCACCACACGCCGACGCCACAGCTCTTCGCGCGCGACCGGCGCGACTTCAGCCACGGCTGCATCCGCGTGGAGGCGC
CGGTGGAACTCGCGCGCTTCGTGCTGCGCGACCAGCCCGAATGGGACGAGGCGCGCATCCGCGAGGCGATGAGCGCGGGC
AGCTCGAAGACCATCCGGGTGGCGACGCCGCTGCCGGTGCTGATCGCCTACGGCACGGCAATGGTCGACGCGGAAGGCCA
CGCCCATTTCTTCCGCGACATCTATGGCCACGACCAGTTGCTGCACGACACGCTGTTGCGGCGCAGTCGTGGAAATTCCC
CTGTTGCGGTCGAAGGCGGGCGGGCACAATAG

Upstream 100 bases:

>100_bases
CGGTGCAGGCGCAATCCGCACCGCAGCCCGCCCACGCCTGAAGGCCCGCAGCGCCGCGGCGGCACGGAACTGTTCGGCGC
CCCCGCGGACTAGTCCTGGT

Downstream 100 bases:

>100_bases
CGCCTGCTTTTCCTACCCCGGCAGCACAACATCTTGAATTCCTTCGCTTCTTCCCGCCGCAGCATGCTGCGCGCCGGGGC
CCGGCTTGCCCTTGCGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MKAPALSVRAPRALRRVFAAWLCGVALLASAPAQTVAAPEEGVAPSWFAHGRPVPAARQAVDILAAAAAEGLDPADYDAG
ALRAQLDALGRGTAPETQAAFDAALSAAMARYLGDVHRGRIDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAA
VPPLPLYGALRTALAHYRTLAAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVD
AVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAPRMIVVNVPEFMLRAYEVRDGRIEVAARM
KVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELVPRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGT
LRIRQRPGPHNALGDIKFVFPNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAG
SSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTLLRRSRGNSPVAVEGGRAQ

Sequences:

>Translated_543_residues
MKAPALSVRAPRALRRVFAAWLCGVALLASAPAQTVAAPEEGVAPSWFAHGRPVPAARQAVDILAAAAAEGLDPADYDAG
ALRAQLDALGRGTAPETQAAFDAALSAAMARYLGDVHRGRIDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAA
VPPLPLYGALRTALAHYRTLAAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVD
AVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAPRMIVVNVPEFMLRAYEVRDGRIEVAARM
KVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELVPRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGT
LRIRQRPGPHNALGDIKFVFPNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAG
SSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTLLRRSRGNSPVAVEGGRAQ
>Mature_543_residues
MKAPALSVRAPRALRRVFAAWLCGVALLASAPAQTVAAPEEGVAPSWFAHGRPVPAARQAVDILAAAAAEGLDPADYDAG
ALRAQLDALGRGTAPETQAAFDAALSAAMARYLGDVHRGRIDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAA
VPPLPLYGALRTALAHYRTLAAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVD
AVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAPRMIVVNVPEFMLRAYEVRDGRIEVAARM
KVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELVPRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGT
LRIRQRPGPHNALGDIKFVFPNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAG
SSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTLLRRSRGNSPVAVEGGRAQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=288, Percent_Identity=36.4583333333333, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58971; Mature: 58971

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPALSVRAPRALRRVFAAWLCGVALLASAPAQTVAAPEEGVAPSWFAHGRPVPAARQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCCCCHHHHHH
VDILAAAAAEGLDPADYDAGALRAQLDALGRGTAPETQAAFDAALSAAMARYLGDVHRGR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAAVPPLPLYGALRTALAHYRTL
CCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVD
HCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
AVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAPRMIVVNVP
HHHHHHHHCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHCCCHHHCCCCEEEEECH
EFMLRAYEVRDGRIEVAARMKVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELV
HHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHH
PRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGTLRIRQRPGPHNALGDIKFVF
HHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
PNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAG
ECCCEEEEEECCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHCC
SSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTLLRRSRGNSPVAVEGG
CCCEEEEECCCHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCC
RAQ
CCC
>Mature Secondary Structure
MKAPALSVRAPRALRRVFAAWLCGVALLASAPAQTVAAPEEGVAPSWFAHGRPVPAARQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCCCCHHHHHH
VDILAAAAAEGLDPADYDAGALRAQLDALGRGTAPETQAAFDAALSAAMARYLGDVHRGR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
IDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAAVPPLPLYGALRTALAHYRTL
CCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVD
HCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
AVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAPRMIVVNVP
HHHHHHHHCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHCCCHHHCCCCEEEEECH
EFMLRAYEVRDGRIEVAARMKVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELV
HHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHH
PRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGTLRIRQRPGPHNALGDIKFVF
HHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
PNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAG
ECCCEEEEEECCCHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHCC
SSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTLLRRSRGNSPVAVEGG
CCCEEEEECCCHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCC
RAQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]