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The map label for this gene is rimM

Identifier: 119899189

GI number: 119899189

Start: 3182235

End: 3182741

Strand: Direct

Name: rimM

Synonym: azo2899

Alternate gene names: 119899189

Gene position: 3182235-3182741 (Clockwise)

Preceding gene: 119899188

Following gene: 119899190

Centisome position: 72.72

GC content: 65.88

Gene sequence:

>507_bases
ATGATGGTACTGGGGCGCATCGTCGCCCCTTTTGGCGTTCAGGGCTGGCTCAAGATCCACCCCTTCGGTGACGACCCCGC
CGCCTGGCGCAAGATGACGCACTGGTGGCTGGCAGAAGATCCGGACGGCCCCGAGAGCGCCTGGGTGCAGTACAAGCTGG
CAAGTTGCCGGCCGCATGGAAAAGGTCTGGTGGCGCTGCTCGAAGGCGTTCCCGACCGCAACGCCGCCGAAGCGATCGAA
GGCCGCTACGTGGGCGCGCCGCGCGATGCGATGCCCGCCCCCGAGAAGGACGAGTACTACTGGGGCGACCTGGTCGGGCT
CGATGTCGTGAACGAGACGGACGAAACCCTGGGTCGCGTCAGCGGCCTGATTTCCACCGGCGCACACGATGTACTGCAGG
TCGAAGACGGCGAGACGGAGCGGCTCATTCCCTTCGTGGCGGCCTATGTACTTGATGTAGACCTCGCGGCCCGGCGCATC
CGGGTGGCGTGGCAGAAAGACTGGTGA

Upstream 100 bases:

>100_bases
GCTTACTGGGAACAGAACGGCGCCCAGCTGTCGCCCACCGTGGCCCGTCTGGTCAAGCAGGCCGCCAAGGCCGCTGCCTG
ATCCCGACGGATCATCGCCA

Downstream 100 bases:

>100_bases
CAGCGACAACCGGCGGAAAACGCCGCTTCGACGTGGTGACGCTGTTTCCGGAGATGTTCGCCGCGCTCACCGCAAGCGGC
ATCACCCGGCGCGCGCGCGA

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHGKGLVALLEGVPDRNAAEAIE
GRYVGAPRDAMPAPEKDEYYWGDLVGLDVVNETDETLGRVSGLISTGAHDVLQVEDGETERLIPFVAAYVLDVDLAARRI
RVAWQKDW

Sequences:

>Translated_168_residues
MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHGKGLVALLEGVPDRNAAEAIE
GRYVGAPRDAMPAPEKDEYYWGDLVGLDVVNETDETLGRVSGLISTGAHDVLQVEDGETERLIPFVAAYVLDVDLAARRI
RVAWQKDW
>Mature_168_residues
MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHGKGLVALLEGVPDRNAAEAIE
GRYVGAPRDAMPAPEKDEYYWGDLVGLDVVNETDETLGRVSGLISTGAHDVLQVEDGETERLIPFVAAYVLDVDLAARRI
RVAWQKDW

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=31.1764705882353, Blast_Score=94, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_AZOSB (A1K9L0)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_934402.1
- ProteinModelPortal:   A1K9L0
- SMR:   A1K9L0
- STRING:   A1K9L0
- GeneID:   4609819
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo2899
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A1K9L0
- ProtClustDB:   CLSK767171
- BioCyc:   ASP62928:AZO2899-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18692; Mature: 18692

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHG
CEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCC
KGLVALLEGVPDRNAAEAIEGRYVGAPRDAMPAPEKDEYYWGDLVGLDVVNETDETLGRV
CCHHEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHH
SGLISTGAHDVLQVEDGETERLIPFVAAYVLDVDLAARRIRVAWQKDW
HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MMVLGRIVAPFGVQGWLKIHPFGDDPAAWRKMTHWWLAEDPDGPESAWVQYKLASCRPHG
CEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHEEECCCCCCCCCCEEEEEECCCCCCC
KGLVALLEGVPDRNAAEAIEGRYVGAPRDAMPAPEKDEYYWGDLVGLDVVNETDETLGRV
CCHHEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHH
SGLISTGAHDVLQVEDGETERLIPFVAAYVLDVDLAARRIRVAWQKDW
HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA