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The map label for this gene is ygbL [C]

Identifier: 119898899

GI number: 119898899

Start: 2890560

End: 2891330

Strand: Reverse

Name: ygbL [C]

Synonym: azo2608

Alternate gene names: 119898899

Gene position: 2891330-2890560 (Counterclockwise)

Preceding gene: 119898900

Following gene: 119898898

Centisome position: 66.07

GC content: 64.59

Gene sequence:

>771_bases
ATGAACACCGCCAACCGCTACTACGAACATCCCGCCCGCTTTTCCGGCACCGAATGGCAAGCCCGCGTGCAGCTCGCCGC
GATGTACCGCATCTTTGCCTACCTGAAGTGGGACGAAGGCATCTACAACCACATCTCGCTGCGGGTGCCGGGCGAGCCCG
GCTTCTACCTGATGAACCCCTTCGGCCTGCATTACTCGGAGGTGTGCGCCTCCAACCTGGTCAAGGTCAATCTGGAGGGG
CGGGTGGTCGACCATTCCGACTGGCCGATCAACCCCGCCGGCGTCACCTTCCACGGCGCCATCCACGGCCACGTGCCGCA
CGGCCACTGCGTGATGCATGTGCACACCACCGCGACCCAGGCGGTGTGCTGCCTGAAGGATGGCTTGTCGTTCAGCAACT
TCTACGCCGCCCAGCTGTACGGCAAGGTCGCCTACCACGACTTCGAGGGCATCACCGTGCATGCCGACGAGGGCGAACGC
ATCCTCGCCAGCGCGGGCGACAAGCCGGTGCTGCTCTTGCGCAACCACGGCCCGGTGGTGATCGGCGCCACGCTGGCGCA
GGCCTTTTCGCTGATGTGGCTGGTCAATCGCGCCTGCGAGATCCAGCTTGCTTCGCAGTCCATGGGGCCGGTGATCGAAC
TGTCCACCGCGGTGCTGGAGAAATGCGTGGCCGATTCGCTCAACTTCGATCCCAAGTACGGCGCCGGGGAGGACGTGTTC
GCCGCCTTCACCCGGCTGGTCGACAAGGTCGATCCGGGTTACCGTCACTGA

Upstream 100 bases:

>100_bases
AGATCACCCGCCAGACGCAGCCCTGACCAGGCCACGTCCGACGAGCCCGGCCGCGGGCCCCGCGATGCGACCGGAAGCAC
CACCTAAGGAGGAGACCACC

Downstream 100 bases:

>100_bases
GCCACGCCGCCGGCATCGGACCGGCGACGGATCGAACGGAGGAGACGCGAGTGAAGATCTGCCTGTATGGCGTCGGTGCG
GTGGGCGGCCTGATCGGCGC

Product: aldolase II superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNTANRYYEHPARFSGTEWQARVQLAAMYRIFAYLKWDEGIYNHISLRVPGEPGFYLMNPFGLHYSEVCASNLVKVNLEG
RVVDHSDWPINPAGVTFHGAIHGHVPHGHCVMHVHTTATQAVCCLKDGLSFSNFYAAQLYGKVAYHDFEGITVHADEGER
ILASAGDKPVLLLRNHGPVVIGATLAQAFSLMWLVNRACEIQLASQSMGPVIELSTAVLEKCVADSLNFDPKYGAGEDVF
AAFTRLVDKVDPGYRH

Sequences:

>Translated_256_residues
MNTANRYYEHPARFSGTEWQARVQLAAMYRIFAYLKWDEGIYNHISLRVPGEPGFYLMNPFGLHYSEVCASNLVKVNLEG
RVVDHSDWPINPAGVTFHGAIHGHVPHGHCVMHVHTTATQAVCCLKDGLSFSNFYAAQLYGKVAYHDFEGITVHADEGER
ILASAGDKPVLLLRNHGPVVIGATLAQAFSLMWLVNRACEIQLASQSMGPVIELSTAVLEKCVADSLNFDPKYGAGEDVF
AAFTRLVDKVDPGYRH
>Mature_256_residues
MNTANRYYEHPARFSGTEWQARVQLAAMYRIFAYLKWDEGIYNHISLRVPGEPGFYLMNPFGLHYSEVCASNLVKVNLEG
RVVDHSDWPINPAGVTFHGAIHGHVPHGHCVMHVHTTATQAVCCLKDGLSFSNFYAAQLYGKVAYHDFEGITVHADEGER
ILASAGDKPVLLLRNHGPVVIGATLAQAFSLMWLVNRACEIQLASQSMGPVIELSTAVLEKCVADSLNFDPKYGAGEDVF
AAFTRLVDKVDPGYRH

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family [H]

Homologues:

Organism=Homo sapiens, GI29826323, Length=250, Percent_Identity=41.2, Blast_Score=151, Evalue=6e-37,
Organism=Homo sapiens, GI29826325, Length=250, Percent_Identity=41.2, Blast_Score=151, Evalue=6e-37,
Organism=Homo sapiens, GI29826321, Length=250, Percent_Identity=41.2, Blast_Score=150, Evalue=9e-37,
Organism=Homo sapiens, GI29826319, Length=250, Percent_Identity=41.2, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI9943848, Length=191, Percent_Identity=38.2198952879581, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI9951927, Length=191, Percent_Identity=38.2198952879581, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI62912453, Length=191, Percent_Identity=38.2198952879581, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI9257190, Length=250, Percent_Identity=34.8, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI89276787, Length=250, Percent_Identity=34.8, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI297307160, Length=250, Percent_Identity=34.8, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI297307158, Length=250, Percent_Identity=34.8, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI9257192, Length=250, Percent_Identity=34.8, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI115533216, Length=196, Percent_Identity=39.7959183673469, Blast_Score=144, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI115533218, Length=192, Percent_Identity=40.625, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI71989544, Length=199, Percent_Identity=35.1758793969849, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71989550, Length=199, Percent_Identity=35.1758793969849, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71989541, Length=199, Percent_Identity=35.1758793969849, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI71989555, Length=199, Percent_Identity=35.1758793969849, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71989560, Length=199, Percent_Identity=35.1758793969849, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI281363755, Length=191, Percent_Identity=29.8429319371728, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281363751, Length=191, Percent_Identity=29.8429319371728, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24655690, Length=191, Percent_Identity=29.8429319371728, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24655685, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281363763, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281363757, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17136738, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281363761, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281363759, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281363753, Length=185, Percent_Identity=30.2702702702703, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 28332; Mature: 28332

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTANRYYEHPARFSGTEWQARVQLAAMYRIFAYLKWDEGIYNHISLRVPGEPGFYLMNP
CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCCEEEECC
FGLHYSEVCASNLVKVNLEGRVVDHSDWPINPAGVTFHGAIHGHVPHGHCVMHVHTTATQ
CCCCHHHHHHCCEEEEEECCEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCHHH
AVCCLKDGLSFSNFYAAQLYGKVAYHDFEGITVHADEGERILASAGDKPVLLLRNHGPVV
HHHHHHCCCCCHHHHHHHHHHHHEEECCCCEEEECCCCCEEEECCCCCCEEEEECCCCEE
IGATLAQAFSLMWLVNRACEIQLASQSMGPVIELSTAVLEKCVADSLNFDPKYGAGEDVF
EEHHHHHHHHHHHHHHHHHEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AAFTRLVDKVDPGYRH
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNTANRYYEHPARFSGTEWQARVQLAAMYRIFAYLKWDEGIYNHISLRVPGEPGFYLMNP
CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCCEEEECC
FGLHYSEVCASNLVKVNLEGRVVDHSDWPINPAGVTFHGAIHGHVPHGHCVMHVHTTATQ
CCCCHHHHHHCCEEEEEECCEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCHHH
AVCCLKDGLSFSNFYAAQLYGKVAYHDFEGITVHADEGERILASAGDKPVLLLRNHGPVV
HHHHHHCCCCCHHHHHHHHHHHHEEECCCCEEEECCCCCEEEECCCCCCEEEEECCCCEE
IGATLAQAFSLMWLVNRACEIQLASQSMGPVIELSTAVLEKCVADSLNFDPKYGAGEDVF
EEHHHHHHHHHHHHHHHHHEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AAFTRLVDKVDPGYRH
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]