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The map label for this gene is cph1 [H]

Identifier: 119898747

GI number: 119898747

Start: 2709625

End: 2711352

Strand: Reverse

Name: cph1 [H]

Synonym: azo2456

Alternate gene names: 119898747

Gene position: 2711352-2709625 (Counterclockwise)

Preceding gene: 119898748

Following gene: 119898746

Centisome position: 61.96

GC content: 68.46

Gene sequence:

>1728_bases
ATGAGTCCGCGGCGGCGCTTCATCCTGCAGGCCACGGCTGCCTATGCCGTGCTGACGCTGGCCTGGATCCTGATCTCCGA
CCGCGTCATCGCCGCGCTCGCCGACGTCGAGCAGGTGATGTGGCTGTCGAGCGCGAAGGGCGTTTTCTACGTCGTTGCCA
GCTCGGTGGGGGTGGGCCTGATGTTGCGCGCGGTGCCGCCGGGCACGGCGGGCGAGGGTGCGACGCTGCTGGATGCACTG
ACCGCCGGCCTGTCGCCCGACACGGTGCCCCGCTGGGTGACCTATCTCTTCGCCGGCGCGGCTTCACTCATCATTCTGGT
GGTGCGTGAGCGCCTGCTCGACCTCTATCCCGCCAGCCCGATGCTGGTGCTGTTCATGCTGCCGATCACGCTGAGCGCGC
TGTTCGGCGGCGCCGGCCCCGGCCTGCTCGCCACGCTGGTGGCCGCGGTGGGCGTGGCCTACCCGATGCTGCCGGTGGCG
CGCCATGTGCTGGTCAACGCCTACGGCGACGTGCTCGACTGGGGCTTGCTGGTGGCGAGCGGGCTGGCGGTGTGCCTGCT
CAGCGAGGTGCTGCGGCGCTCGATTGCGCGCGTGGAAGTGCACCGCCGCCTGCTCGACACCATCATCTCCGGCACGTCGG
ACGCGATTTTCGTCAAGGACACGCGGGGCCGCTATCTGCTGGCCAACGCGGCGATGGCCACCTATGCCAGGGACGAGGGC
CGGGTGCTGCTGGGGCAGGACGACACCGCGCTGCTGGATGGCGATTCCGCTGCCGAGGTGATGAAGAACGACCGCGAGAT
CATGCTGGAGCGGCAGACCCGAACGCTGGAGGAGCAGCTCACCACCCGCGGCGGCCGGCCGTTGGCGTTCCTGGTGACCA
AGGGCCCGGTGCTCGACGACCAGGGGCGTGCCGTGGGCGTGTTCGGCATCGGCCATGAAATCACCGAGCGCAAACGTGCC
GAAGCGGAAATCCGCGATCTCAATGCCGACCTGGAGCGCCGCGTGGGGGAGCGCACCGCCGAACTGCAATCCGCCAACCG
CGAGCTGGAGGACCTGGCGTATGCGCTGACCCATAACCTGCGGGCGCCGCTGCGCGCCATCAACGGCTTCGCCCGGTTGT
TGCTGGAAGGGCACGCCGAGCGCCTGAACGCGGAAGCGCGCGACGAACTGATGCAGATCCAGCGTGCCGGTGGTCGCATG
GGGGACATGCTGAACGGCATCCTGGCGCTGTTGCGCTCCACCGGAAAGGGGTTGATGCGCACCGAGATCGACCTCTCGGC
ACTGGTGGTGCGGCGTCTGGCCGATCTGGTCGAGGTAGAACCGGAGCGCCGGCTGCAAAGCGAGGTGGAGCCCGGACTGG
TGGTCCATGGCGATCCGGAGATGCTGCAACTCGCGGTGCTACATCTGATCGACAATGCGTGGAAGTTCACCCGCGGGCGC
AACCCCGCGGTGATCCGGCTGAGCGGCGAGGCCGGCCCCGGTTTTCGCCGGATCTACATCAGCGACAATGGGGTCGGATT
TGACATGGCGCACGCGCAGCGCCTGTTCAATCCCTTCCAGCGGCTGCACCGCGAGGACGAGTTCCAGGGGCTGGGCATCG
GCCTGGCCACCGTTCAACGCATCCTGCGCCGCCACGGCGGCGACATCGAGGCCCGGGGCGCTCCGGGCGAGGGTGCGACC
TTCTGCATCTATCTGCCGGACTCGAACGGCAGCGGAGACAAGTCATGA

Upstream 100 bases:

>100_bases
TCGTCCGCCGCCATGGCGGCGAGATCCGCGCCGAGGGCCATCCGGGCGGCGGCGCGCGCTTCTGCCTGACACTGACGCCG
CGCGACGGAAGGCGCTGAAC

Downstream 100 bases:

>100_bases
CGACCCAGAGCCCGATTCTGCTGGTGGAAGACAACGCCCAGGATGAAATGCTGATCCTGCGTGCGCTGAAGAAGATCAAT
GTGGCCAACGGCGTCGACGT

Product: putative two-component system sensor protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 575; Mature: 574

Protein sequence:

>575_residues
MSPRRRFILQATAAYAVLTLAWILISDRVIAALADVEQVMWLSSAKGVFYVVASSVGVGLMLRAVPPGTAGEGATLLDAL
TAGLSPDTVPRWVTYLFAGAASLIILVVRERLLDLYPASPMLVLFMLPITLSALFGGAGPGLLATLVAAVGVAYPMLPVA
RHVLVNAYGDVLDWGLLVASGLAVCLLSEVLRRSIARVEVHRRLLDTIISGTSDAIFVKDTRGRYLLANAAMATYARDEG
RVLLGQDDTALLDGDSAAEVMKNDREIMLERQTRTLEEQLTTRGGRPLAFLVTKGPVLDDQGRAVGVFGIGHEITERKRA
EAEIRDLNADLERRVGERTAELQSANRELEDLAYALTHNLRAPLRAINGFARLLLEGHAERLNAEARDELMQIQRAGGRM
GDMLNGILALLRSTGKGLMRTEIDLSALVVRRLADLVEVEPERRLQSEVEPGLVVHGDPEMLQLAVLHLIDNAWKFTRGR
NPAVIRLSGEAGPGFRRIYISDNGVGFDMAHAQRLFNPFQRLHREDEFQGLGIGLATVQRILRRHGGDIEARGAPGEGAT
FCIYLPDSNGSGDKS

Sequences:

>Translated_575_residues
MSPRRRFILQATAAYAVLTLAWILISDRVIAALADVEQVMWLSSAKGVFYVVASSVGVGLMLRAVPPGTAGEGATLLDAL
TAGLSPDTVPRWVTYLFAGAASLIILVVRERLLDLYPASPMLVLFMLPITLSALFGGAGPGLLATLVAAVGVAYPMLPVA
RHVLVNAYGDVLDWGLLVASGLAVCLLSEVLRRSIARVEVHRRLLDTIISGTSDAIFVKDTRGRYLLANAAMATYARDEG
RVLLGQDDTALLDGDSAAEVMKNDREIMLERQTRTLEEQLTTRGGRPLAFLVTKGPVLDDQGRAVGVFGIGHEITERKRA
EAEIRDLNADLERRVGERTAELQSANRELEDLAYALTHNLRAPLRAINGFARLLLEGHAERLNAEARDELMQIQRAGGRM
GDMLNGILALLRSTGKGLMRTEIDLSALVVRRLADLVEVEPERRLQSEVEPGLVVHGDPEMLQLAVLHLIDNAWKFTRGR
NPAVIRLSGEAGPGFRRIYISDNGVGFDMAHAQRLFNPFQRLHREDEFQGLGIGLATVQRILRRHGGDIEARGAPGEGAT
FCIYLPDSNGSGDKS
>Mature_574_residues
SPRRRFILQATAAYAVLTLAWILISDRVIAALADVEQVMWLSSAKGVFYVVASSVGVGLMLRAVPPGTAGEGATLLDALT
AGLSPDTVPRWVTYLFAGAASLIILVVRERLLDLYPASPMLVLFMLPITLSALFGGAGPGLLATLVAAVGVAYPMLPVAR
HVLVNAYGDVLDWGLLVASGLAVCLLSEVLRRSIARVEVHRRLLDTIISGTSDAIFVKDTRGRYLLANAAMATYARDEGR
VLLGQDDTALLDGDSAAEVMKNDREIMLERQTRTLEEQLTTRGGRPLAFLVTKGPVLDDQGRAVGVFGIGHEITERKRAE
AEIRDLNADLERRVGERTAELQSANRELEDLAYALTHNLRAPLRAINGFARLLLEGHAERLNAEARDELMQIQRAGGRMG
DMLNGILALLRSTGKGLMRTEIDLSALVVRRLADLVEVEPERRLQSEVEPGLVVHGDPEMLQLAVLHLIDNAWKFTRGRN
PAVIRLSGEAGPGFRRIYISDNGVGFDMAHAQRLFNPFQRLHREDEFQGLGIGLATVQRILRRHGGDIEARGAPGEGATF
CIYLPDSNGSGDKS

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=389, Percent_Identity=23.9074550128535, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788549, Length=389, Percent_Identity=26.2210796915167, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789149, Length=258, Percent_Identity=25.1937984496124, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786912, Length=508, Percent_Identity=24.8031496062992, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1790436, Length=227, Percent_Identity=29.0748898678414, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1790861, Length=235, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081816, Length=283, Percent_Identity=27.208480565371, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI145693157, Length=122, Percent_Identity=34.4262295081967, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1790346, Length=217, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 62518; Mature: 62387

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRRRFILQATAAYAVLTLAWILISDRVIAALADVEQVMWLSSAKGVFYVVASSVGVGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCE
MLRAVPPGTAGEGATLLDALTAGLSPDTVPRWVTYLFAGAASLIILVVRERLLDLYPASP
EEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MLVLFMLPITLSALFGGAGPGLLATLVAAVGVAYPMLPVARHVLVNAYGDVLDWGLLVAS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLAVCLLSEVLRRSIARVEVHRRLLDTIISGTSDAIFVKDTRGRYLLANAAMATYARDEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCCC
RVLLGQDDTALLDGDSAAEVMKNDREIMLERQTRTLEEQLTTRGGRPLAFLVTKGPVLDD
CEEECCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECC
QGRAVGVFGIGHEITERKRAEAEIRDLNADLERRVGERTAELQSANRELEDLAYALTHNL
CCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RAPLRAINGFARLLLEGHAERLNAEARDELMQIQRAGGRMGDMLNGILALLRSTGKGLMR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
TEIDLSALVVRRLADLVEVEPERRLQSEVEPGLVVHGDPEMLQLAVLHLIDNAWKFTRGR
EHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
NPAVIRLSGEAGPGFRRIYISDNGVGFDMAHAQRLFNPFQRLHREDEFQGLGIGLATVQR
CCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ILRRHGGDIEARGAPGEGATFCIYLPDSNGSGDKS
HHHHCCCCEEECCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SPRRRFILQATAAYAVLTLAWILISDRVIAALADVEQVMWLSSAKGVFYVVASSVGVGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCE
MLRAVPPGTAGEGATLLDALTAGLSPDTVPRWVTYLFAGAASLIILVVRERLLDLYPASP
EEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
MLVLFMLPITLSALFGGAGPGLLATLVAAVGVAYPMLPVARHVLVNAYGDVLDWGLLVAS
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLAVCLLSEVLRRSIARVEVHRRLLDTIISGTSDAIFVKDTRGRYLLANAAMATYARDEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCCC
RVLLGQDDTALLDGDSAAEVMKNDREIMLERQTRTLEEQLTTRGGRPLAFLVTKGPVLDD
CEEECCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECC
QGRAVGVFGIGHEITERKRAEAEIRDLNADLERRVGERTAELQSANRELEDLAYALTHNL
CCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RAPLRAINGFARLLLEGHAERLNAEARDELMQIQRAGGRMGDMLNGILALLRSTGKGLMR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE
TEIDLSALVVRRLADLVEVEPERRLQSEVEPGLVVHGDPEMLQLAVLHLIDNAWKFTRGR
EHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
NPAVIRLSGEAGPGFRRIYISDNGVGFDMAHAQRLFNPFQRLHREDEFQGLGIGLATVQR
CCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
ILRRHGGDIEARGAPGEGATFCIYLPDSNGSGDKS
HHHHCCCCEEECCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]