| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is glnD [H]
Identifier: 119898202
GI number: 119898202
Start: 2094419
End: 2097004
Strand: Direct
Name: glnD [H]
Synonym: azo1911
Alternate gene names: 119898202
Gene position: 2094419-2097004 (Clockwise)
Preceding gene: 119898201
Following gene: 119898204
Centisome position: 47.86
GC content: 67.05
Gene sequence:
>2586_bases ATGAACGACATGGTGATCTCCATCGACGCGCTGCAGGGCGCGATCGGCGAGGCGCGGCGCGAGCTGGCTGAGGGCAACGC CGCGCTGCGCAGCGCCTACGAGGCACATCCTCTGACCGCCGCGCTGCTGAAGGGGCGCGCCCGTCTCGTCGATCAGGCCA TCCTGCGGCTGTGGCGCGCCTGCGCGATCCCGCCGGAGGCCACACTCGTCGCGGTCGGTGGGTACGGGCGCGGCGAGCTG TATCCCTGTTCGGACGTGGATCTGCTGATCCTGCTCGCGCAGCCTGCGGATGGCGCCTTGCAGGCGCGGCTGTCGACCCT GGTGGGCGCGCTGTGGGACACCGGCCTCGAGATCGGCCACAGCGTGCGGACGGTCGAGGAATGCCTCGACGCGGCAATGT CCGACATCACCGTGCAGACCAACCTGCTGGAAGCCCGCCTGCTCACCGGCGACGCCGAGCTGTTTGCCGACTTCCAGGCG CGCTACAACGAAACGCTCGATGTTCGCGCCTTCTTCAAGGCCAAGCAGCTCGAGCAGGAGCAGCGCTACACGCGCTACAA CGACACGCCCTACTCGCTCGAACCCAACTGCAAGGAAAGCCCCGGCGGCCTGCGTGACCTGCAGATGCTGGGCTGGATCG CGCGGGCGGCCGGGCTGGGGCGTAACTGGCGCGATCTCGCCCGCCGCCGCCTGATCACCGGCGAGGAAGCCAGTGACCTG CGCAGCGTCGAGCGTTTCCTGCAGCACGTGCGCATCCGGCTGCACTACCTCACCGGGCGCGCCGAGGACCGCCTGCTGTT CGACCACCAGGAAAAGCTCGCGCGCATCATGGGCGTCGAGGCCACGGTGGGCAAACGCGCGTCCGAAGTGTTCATGCAGC GCTACTACCTGACGGCGAAGAAGGTCACCCAGATCAACGCCATCCTGCTGCAGAACTACGGTACCGAAATCTTCCCCGAC CGCGGCGGCGCCGCGATCGTCATCAACGCCCGCTTCCAGGCAGTGCGCGAACTGCTCGACATCCGCGACGAGACGGTGTT CGAGTGCCATCCCTCGGCCCTGCTCGAATGCTTCCTGCTGATGCAGCAGCGTCCCGAGCTGAAGGGCATGACCGCGCGTA CGCTGCGGGCGCTGTGGCTCAACCGCAACCGCATCAATGCGGCGTTTCGCGCAGATCCGGTCAACCGCGCGCTGTTTCTG CAGATCCTGCAGGAAAAGCGCGGGATCGTGCATGAGTTCCGGCGCATGAACCAGTACGGCGTGCTGTCCCGCTACCTGCC GCCGTGGCGCAAGATCCTGTGCCAGATGCAGCACGACCTGTTCCACGTCTACACGGTGGATCAGCACATCCTGATGGTGC TGCGCAACATGCGCCGCTTCACCATGGGCGAGCACGCGCACGAATACCCTTTAATGACGCGGCTCATCCTCGGCTTCGAA CGGCACTGGCTGCTCTACGTGGCCGCGCTGTACCACGACATCGCCAAGGGCCGCGGGGGGGACCATTCCAAGCTCGGCAT GGAAGACGCGCGCGAGTTCTGCGAAGACCATGGCCTGTCGGCGGAGGACACGGAACTCGTCGTCTGGCTGGTCGAGCACC ACCTCACGATGTCGCACGTGGCGCAGAAGGAAGACACTTCCGACCCCGAAGTCGTGCGCCGTTTCGCCGACACCGTGGGC AGCGAGCGCAAGCTCACTGCGCTCTACCTGCTCACCCACGCCGACATCCGCGGCACCAGCCCCAAGGTGTGGAACGGCTG GAAGGGCAAGCTGCTCGAAGACCTCTTCTTCGCCACCCAGCGCCTCTTGCGCGGCGCCACGCCGCAGCAGGCCCTTGGTC TGGACGACCGCCAGGAGGACGCGCGCCGGCTGCTGCGCTACCACGGCCTGCGGCCGGGCGTCGAGGACGCGCTGTGGGCG CAGCTCGATGCCGTCTATTTCATGCGGCATTCGCCGGAAGAGATTGCGTGGCACACCCGCCTGCTCTATTTCCGCCCGGA GGTGGACGAGCCGGTCGTGAAGGCGCGCGTGTCCGAAGGTGAGGAAGGCGTGCAGGTGATGGTGTTCACCCGCGACGAAA AGGATCTCTTCGCCCGCATCACCGGCTTTTTCGGCCGCATCGGGTTCACGATTCTCGACGCCAAGGTGCACACCACGCGG CACGGCTACGCGCTCGACAGCTTCATGCTGCAGGACCCCGGCAACGCGGCGCCCTACCGCGACGTCGTCGCCTTGATCGA GCACGAACTGGCGCTGCGGTTGCAGAAGGGCGGCGCCCTCGAACGGCCTTCCAGCGGCCGGCTGTCGCGCCAGGTGAAGC ATTTCCCGATCACGCCCGAGGTCAGCCTGCGTCCCGACGATGCCGGCCGCCACTACATCCTGTCGCTGGTCGCGGCCGAT CGCCCGGGGCTGCTGTTCGACGTGGCCGAGGTGCTGGCCAAGTACGGCATCAGCCTGCAGACCGCCAAGATCGCCACGCT GGGCGAGCGGGTGGAGGATACCTTCCTGCTCACTGGCGCAGGGCTGTCGCAGGACGCCCACGTGCTGCGTCTGGAACGCG AACTGCTGGACCGCCTGCAGCTCTAG
Upstream 100 bases:
>100_bases ACCGAGACGGGCGTGGAGGTGCTGACCCTGTCGGCCAAGTGCCCGCCGCCCCCGCCCCTGGTCGCGGCGTCGTTTGCCTG ACTTGCCGCCGGGTTCCGCG
Downstream 100 bases:
>100_bases TACGAAAGCAAACGGGGCCGGACGCTCACGCGCCCGGCCCCGTTCCGTGTGCGACGAGGCTCAGTGGTCCTTGGCGGCCA GCTTGTCGGTCAGCGCGTAG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MNDMVISIDALQGAIGEARRELAEGNAALRSAYEAHPLTAALLKGRARLVDQAILRLWRACAIPPEATLVAVGGYGRGEL YPCSDVDLLILLAQPADGALQARLSTLVGALWDTGLEIGHSVRTVEECLDAAMSDITVQTNLLEARLLTGDAELFADFQA RYNETLDVRAFFKAKQLEQEQRYTRYNDTPYSLEPNCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRRLITGEEASDL RSVERFLQHVRIRLHYLTGRAEDRLLFDHQEKLARIMGVEATVGKRASEVFMQRYYLTAKKVTQINAILLQNYGTEIFPD RGGAAIVINARFQAVRELLDIRDETVFECHPSALLECFLLMQQRPELKGMTARTLRALWLNRNRINAAFRADPVNRALFL QILQEKRGIVHEFRRMNQYGVLSRYLPPWRKILCQMQHDLFHVYTVDQHILMVLRNMRRFTMGEHAHEYPLMTRLILGFE RHWLLYVAALYHDIAKGRGGDHSKLGMEDAREFCEDHGLSAEDTELVVWLVEHHLTMSHVAQKEDTSDPEVVRRFADTVG SERKLTALYLLTHADIRGTSPKVWNGWKGKLLEDLFFATQRLLRGATPQQALGLDDRQEDARRLLRYHGLRPGVEDALWA QLDAVYFMRHSPEEIAWHTRLLYFRPEVDEPVVKARVSEGEEGVQVMVFTRDEKDLFARITGFFGRIGFTILDAKVHTTR HGYALDSFMLQDPGNAAPYRDVVALIEHELALRLQKGGALERPSSGRLSRQVKHFPITPEVSLRPDDAGRHYILSLVAAD RPGLLFDVAEVLAKYGISLQTAKIATLGERVEDTFLLTGAGLSQDAHVLRLERELLDRLQL
Sequences:
>Translated_861_residues MNDMVISIDALQGAIGEARRELAEGNAALRSAYEAHPLTAALLKGRARLVDQAILRLWRACAIPPEATLVAVGGYGRGEL YPCSDVDLLILLAQPADGALQARLSTLVGALWDTGLEIGHSVRTVEECLDAAMSDITVQTNLLEARLLTGDAELFADFQA RYNETLDVRAFFKAKQLEQEQRYTRYNDTPYSLEPNCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRRLITGEEASDL RSVERFLQHVRIRLHYLTGRAEDRLLFDHQEKLARIMGVEATVGKRASEVFMQRYYLTAKKVTQINAILLQNYGTEIFPD RGGAAIVINARFQAVRELLDIRDETVFECHPSALLECFLLMQQRPELKGMTARTLRALWLNRNRINAAFRADPVNRALFL QILQEKRGIVHEFRRMNQYGVLSRYLPPWRKILCQMQHDLFHVYTVDQHILMVLRNMRRFTMGEHAHEYPLMTRLILGFE RHWLLYVAALYHDIAKGRGGDHSKLGMEDAREFCEDHGLSAEDTELVVWLVEHHLTMSHVAQKEDTSDPEVVRRFADTVG SERKLTALYLLTHADIRGTSPKVWNGWKGKLLEDLFFATQRLLRGATPQQALGLDDRQEDARRLLRYHGLRPGVEDALWA QLDAVYFMRHSPEEIAWHTRLLYFRPEVDEPVVKARVSEGEEGVQVMVFTRDEKDLFARITGFFGRIGFTILDAKVHTTR HGYALDSFMLQDPGNAAPYRDVVALIEHELALRLQKGGALERPSSGRLSRQVKHFPITPEVSLRPDDAGRHYILSLVAAD RPGLLFDVAEVLAKYGISLQTAKIATLGERVEDTFLLTGAGLSQDAHVLRLERELLDRLQL >Mature_861_residues MNDMVISIDALQGAIGEARRELAEGNAALRSAYEAHPLTAALLKGRARLVDQAILRLWRACAIPPEATLVAVGGYGRGEL YPCSDVDLLILLAQPADGALQARLSTLVGALWDTGLEIGHSVRTVEECLDAAMSDITVQTNLLEARLLTGDAELFADFQA RYNETLDVRAFFKAKQLEQEQRYTRYNDTPYSLEPNCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRRLITGEEASDL RSVERFLQHVRIRLHYLTGRAEDRLLFDHQEKLARIMGVEATVGKRASEVFMQRYYLTAKKVTQINAILLQNYGTEIFPD RGGAAIVINARFQAVRELLDIRDETVFECHPSALLECFLLMQQRPELKGMTARTLRALWLNRNRINAAFRADPVNRALFL QILQEKRGIVHEFRRMNQYGVLSRYLPPWRKILCQMQHDLFHVYTVDQHILMVLRNMRRFTMGEHAHEYPLMTRLILGFE RHWLLYVAALYHDIAKGRGGDHSKLGMEDAREFCEDHGLSAEDTELVVWLVEHHLTMSHVAQKEDTSDPEVVRRFADTVG SERKLTALYLLTHADIRGTSPKVWNGWKGKLLEDLFFATQRLLRGATPQQALGLDDRQEDARRLLRYHGLRPGVEDALWA QLDAVYFMRHSPEEIAWHTRLLYFRPEVDEPVVKARVSEGEEGVQVMVFTRDEKDLFARITGFFGRIGFTILDAKVHTTR HGYALDSFMLQDPGNAAPYRDVVALIEHELALRLQKGGALERPSSGRLSRQVKHFPITPEVSLRPDDAGRHYILSLVAAD RPGLLFDVAEVLAKYGISLQTAKIATLGERVEDTFLLTGAGLSQDAHVLRLERELLDRLQL
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=807, Percent_Identity=37.6703841387856, Blast_Score=520, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 97880; Mature: 97880
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDMVISIDALQGAIGEARRELAEGNAALRSAYEAHPLTAALLKGRARLVDQAILRLWRA CCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH CAIPPEATLVAVGGYGRGELYPCSDVDLLILLAQPADGALQARLSTLVGALWDTGLEIGH HCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCH SVRTVEECLDAAMSDITVQTNLLEARLLTGDAELFADFQARYNETLDVRAFFKAKQLEQE HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH QRYTRYNDTPYSLEPNCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRRLITGEEASDL HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHH RSVERFLQHVRIRLHYLTGRAEDRLLFDHQEKLARIMGVEATVGKRASEVFMQRYYLTAK HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH KVTQINAILLQNYGTEIFPDRGGAAIVINARFQAVRELLDIRDETVFECHPSALLECFLL HHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH MQQRPELKGMTARTLRALWLNRNRINAAFRADPVNRALFLQILQEKRGIVHEFRRMNQYG HHCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHH VLSRYLPPWRKILCQMQHDLFHVYTVDQHILMVLRNMRRFTMGEHAHEYPLMTRLILGFE HHHHCCCHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RHWLLYVAALYHDIAKGRGGDHSKLGMEDAREFCEDHGLSAEDTELVVWLVEHHLTMSHV HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHH AQKEDTSDPEVVRRFADTVGSERKLTALYLLTHADIRGTSPKVWNGWKGKLLEDLFFATQ HHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RLLRGATPQQALGLDDRQEDARRLLRYHGLRPGVEDALWAQLDAVYFMRHSPEEIAWHTR HHHCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHE LLYFRPEVDEPVVKARVSEGEEGVQVMVFTRDEKDLFARITGFFGRIGFTILDAKVHTTR EEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECEEECCC HGYALDSFMLQDPGNAAPYRDVVALIEHELALRLQKGGALERPSSGRLSRQVKHFPITPE CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC VSLRPDDAGRHYILSLVAADRPGLLFDVAEVLAKYGISLQTAKIATLGERVEDTFLLTGA CEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCEEEEECC GLSQDAHVLRLERELLDRLQL CCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MNDMVISIDALQGAIGEARRELAEGNAALRSAYEAHPLTAALLKGRARLVDQAILRLWRA CCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH CAIPPEATLVAVGGYGRGELYPCSDVDLLILLAQPADGALQARLSTLVGALWDTGLEIGH HCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCH SVRTVEECLDAAMSDITVQTNLLEARLLTGDAELFADFQARYNETLDVRAFFKAKQLEQE HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH QRYTRYNDTPYSLEPNCKESPGGLRDLQMLGWIARAAGLGRNWRDLARRRLITGEEASDL HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHH RSVERFLQHVRIRLHYLTGRAEDRLLFDHQEKLARIMGVEATVGKRASEVFMQRYYLTAK HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH KVTQINAILLQNYGTEIFPDRGGAAIVINARFQAVRELLDIRDETVFECHPSALLECFLL HHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH MQQRPELKGMTARTLRALWLNRNRINAAFRADPVNRALFLQILQEKRGIVHEFRRMNQYG HHCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHH VLSRYLPPWRKILCQMQHDLFHVYTVDQHILMVLRNMRRFTMGEHAHEYPLMTRLILGFE HHHHCCCHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RHWLLYVAALYHDIAKGRGGDHSKLGMEDAREFCEDHGLSAEDTELVVWLVEHHLTMSHV HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHH AQKEDTSDPEVVRRFADTVGSERKLTALYLLTHADIRGTSPKVWNGWKGKLLEDLFFATQ HHCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH RLLRGATPQQALGLDDRQEDARRLLRYHGLRPGVEDALWAQLDAVYFMRHSPEEIAWHTR HHHCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHE LLYFRPEVDEPVVKARVSEGEEGVQVMVFTRDEKDLFARITGFFGRIGFTILDAKVHTTR EEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECEEECCC HGYALDSFMLQDPGNAAPYRDVVALIEHELALRLQKGGALERPSSGRLSRQVKHFPITPE CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC VSLRPDDAGRHYILSLVAADRPGLLFDVAEVLAKYGISLQTAKIATLGERVEDTFLLTGA CEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCEEEEECC GLSQDAHVLRLERELLDRLQL CCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA