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The map label for this gene is yjjV [H]

Identifier: 119897988

GI number: 119897988

Start: 1865974

End: 1866795

Strand: Direct

Name: yjjV [H]

Synonym: azo1697

Alternate gene names: 119897988

Gene position: 1865974-1866795 (Clockwise)

Preceding gene: 119897987

Following gene: 119897990

Centisome position: 42.64

GC content: 67.88

Gene sequence:

>822_bases
GTGGCCTCACCCGCGGGTGTCGATCCAGCCGAGCCGGAATTCGGGCTGGTCGACACCCACATCCATCTCGACGCTGCTGA
GTTCGACGCAGACCGTGCGGAAGTGGCGCAGGCGGCACGCAAGGCCGGGGTGAGTTGCTTCGTCGTGCCTGCGGTCGATG
TGTCCAGCTTCGGCCGTATTCGGCGGCTCGCCGCGCAGCGCACCGACGTGGTCTTTGCGCTCGGCATCCATCCGCTCTAT
GTGGACAAGGCCGAGGACGACGACCTGGTGCGGCTGGCAGCCGCGCTGGAGGAGGGCGGCGCGGTTGCGATCGGCGAAAT
CGGCCTCGATTTCTTCGTGCCGGGACTGGATCCAATGCTTCAGGAGCGCTTTTTCACCGCGCAGCTGGCGCTGGCCCACG
ACCTCGATCTTCCGGTGATTCTCCACGTGCGGCGGGCCGTCGACGCGATTCTCAAGCAGTTGCGCCGCTTCCGCGTCCGC
GGTGGGATCGCACACGCATTCAACGGCAGCCGCCAGCAGGCGGAAGCGTTCATCGCGCTCGGCTTCAAGCTGGGTTTCGG
CGGTGCGATGAGCTTCGAGGGGTCGCGACGCATTCGCGAACTTGCGCGGGAACTGCCGCTGGACTGCCTGGTGCTGGAAA
CCGACGCTCCCGATATTCCGCCCGCGTGGGCGCGGGGCCAGCGCAACGCGCCGGAAAACCTGGCCCGCTACGCTGCCTTG
CTCGCCGAGCTGCGCGATGTGCCGGTGGCCGAGGTGATCCGCGCGACCACGCGCAATGCGTGCAATGCGCTACCGGGACT
CGCTGCGCGTCTCGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGGCGAAACGATGGCGTGCAACATGATGGCGGACGACGCCGCCGAAGGCATCGATGCTTTCATCGCCAAGCGCAAGCCG
GAGTGGTCGGGACGCTGAGC

Downstream 100 bases:

>100_bases
TGCCGGGGCCGGTTGTGCCGATCCGGCGATGAGATCCGCGATGTCGCGCTTCAGGCGCGCAATGTCGCTGTCGAAATTCT
CGTAGATCATCAGCGAAATG

Product: putative deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MASPAGVDPAEPEFGLVDTHIHLDAAEFDADRAEVAQAARKAGVSCFVVPAVDVSSFGRIRRLAAQRTDVVFALGIHPLY
VDKAEDDDLVRLAAALEEGGAVAIGEIGLDFFVPGLDPMLQERFFTAQLALAHDLDLPVILHVRRAVDAILKQLRRFRVR
GGIAHAFNGSRQQAEAFIALGFKLGFGGAMSFEGSRRIRELARELPLDCLVLETDAPDIPPAWARGQRNAPENLARYAAL
LAELRDVPVAEVIRATTRNACNALPGLAARLGR

Sequences:

>Translated_273_residues
MASPAGVDPAEPEFGLVDTHIHLDAAEFDADRAEVAQAARKAGVSCFVVPAVDVSSFGRIRRLAAQRTDVVFALGIHPLY
VDKAEDDDLVRLAAALEEGGAVAIGEIGLDFFVPGLDPMLQERFFTAQLALAHDLDLPVILHVRRAVDAILKQLRRFRVR
GGIAHAFNGSRQQAEAFIALGFKLGFGGAMSFEGSRRIRELARELPLDCLVLETDAPDIPPAWARGQRNAPENLARYAAL
LAELRDVPVAEVIRATTRNACNALPGLAARLGR
>Mature_272_residues
ASPAGVDPAEPEFGLVDTHIHLDAAEFDADRAEVAQAARKAGVSCFVVPAVDVSSFGRIRRLAAQRTDVVFALGIHPLYV
DKAEDDDLVRLAAALEEGGAVAIGEIGLDFFVPGLDPMLQERFFTAQLALAHDLDLPVILHVRRAVDAILKQLRRFRVRG
GIAHAFNGSRQQAEAFIALGFKLGFGGAMSFEGSRRIRELARELPLDCLVLETDAPDIPPAWARGQRNAPENLARYAALL
AELRDVPVAEVIRATTRNACNALPGLAARLGR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=32.3308270676692, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=32.3308270676692, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=31.7343173431734, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=31.0077519379845, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI225903424, Length=280, Percent_Identity=27.5, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI14042943, Length=298, Percent_Identity=25.503355704698, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI225903439, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI226061595, Length=225, Percent_Identity=31.1111111111111, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=42.8, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=35.361216730038, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI48994985, Length=266, Percent_Identity=31.9548872180451, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=26.8199233716475, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=26.1484098939929, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648690, Length=280, Percent_Identity=29.2857142857143, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI221330018, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24586117, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29458; Mature: 29327

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPAGVDPAEPEFGLVDTHIHLDAAEFDADRAEVAQAARKAGVSCFVVPAVDVSSFGRI
CCCCCCCCCCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
RRLAAQRTDVVFALGIHPLYVDKAEDDDLVRLAAALEEGGAVAIGEIGLDFFVPGLDPML
HHHHHHHCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHCCCCCCHHH
QERFFTAQLALAHDLDLPVILHVRRAVDAILKQLRRFRVRGGIAHAFNGSRQQAEAFIAL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
GFKLGFGGAMSFEGSRRIRELARELPLDCLVLETDAPDIPPAWARGQRNAPENLARYAAL
HEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHH
LAELRDVPVAEVIRATTRNACNALPGLAARLGR
HHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure 
ASPAGVDPAEPEFGLVDTHIHLDAAEFDADRAEVAQAARKAGVSCFVVPAVDVSSFGRI
CCCCCCCCCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
RRLAAQRTDVVFALGIHPLYVDKAEDDDLVRLAAALEEGGAVAIGEIGLDFFVPGLDPML
HHHHHHHCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCHHHCCCCCCHHH
QERFFTAQLALAHDLDLPVILHVRRAVDAILKQLRRFRVRGGIAHAFNGSRQQAEAFIAL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
GFKLGFGGAMSFEGSRRIRELARELPLDCLVLETDAPDIPPAWARGQRNAPENLARYAAL
HEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHH
LAELRDVPVAEVIRATTRNACNALPGLAARLGR
HHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]