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The map label for this gene is nlpD [C]

Identifier: 119897380

GI number: 119897380

Start: 1171714

End: 1172622

Strand: Direct

Name: nlpD [C]

Synonym: azo1089

Alternate gene names: 119897380

Gene position: 1171714-1172622 (Clockwise)

Preceding gene: 119897379

Following gene: 119897381

Centisome position: 26.78

GC content: 63.92

Gene sequence:

>909_bases
ATGAACGACTCAGTGAATATCAAAAAGCGGATTGCTCCTTATTTTCTTGCGCTCGGCGTGCTGTTCCTGGCGGGCTGCGC
GTCTCGCGCTCCGGTTGCGGTGCGCGATGGCAATGGTGTGGCGCCGCCACCGGCGGCGGCTCCAGTCGCAGACCGGGCAG
GCGTGCACGTTGTCCGCGCGGGAGAAACCCTGCTCGGGATCGCGCGGCAGTACGGCCAGAATGTAAAAGATCTTGTCGTA
TGGAACGGGCTGACCAATCCCAACCAGATTCATGTCGGGCAGGAAATCAGGGTCTTGCCGCCGGATGCCAACGCCATCCC
CGGCGGCGCTGTTGCGACTCCCATCCCGATCACCTCGGAACCGCCGGTGGCCGTGCCGGTCGTACCGCAACCTGCCACAG
CGGGGGCTCTGAAGCTCGAACCCAAGGGCGGGAAGCAGCCCTACTCGGATGAACTGTGGGCCCGCGTACGTCGCTCCGGC
GAGCCCGCCGCGCCTGTCGCCAGCGAGCCGCGCGCAACGCAGGCGCCCGAGCAGGAGCCGGGCGACGCCGAGTGGCTGTG
GCCTGCAAAAGGCAAGGTGTTGAGCGGTTTCAACGAGGCCACCAACAAGGGTATCGACATTTCCGGCAACCCCGGCGACG
CCGTGGTTGCCTCGGCCGCGGGGCGCGTGGTGTATGCCGGCAGCGGGTTGCGTGGCTACGGAAAACTGGTCATCATCAAG
CACAATCAGGAGTACAACTCGGTCTACGCCCACAACCAGAAGCTGCTGGTTAAAGAAGACGATCAGGTCTCACAGGGACA
GAAGATCGCCGAGTTGGGCAGTACCGATGCAGACCGGCCCAAGCTGCATTTCGAGATTCGCAAGCAGGGGCGGCCGGTGG
ATCCGATGAAGTTCCTGTCTGCACGCTGA

Upstream 100 bases:

>100_bases
GTGGTGAACAGCGACTGTTGCTGATCGAACGCCAAGGCAACGTATTCAGGGAGAGCGGTTACGAGGCGGTGCGCTTCGTG
CCGTTGCTTGCAGGTACCGA

Downstream 100 bases:

>100_bases
GAGGAGGCGTATGGAAGATCCGGTTAGCTCTGACGAACTCGAAAGTCATGAACCGGATCTCCCGCTGGAGGTCGAGGTGT
TTGCGGAGCCGCATGCACCG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNDSVNIKKRIAPYFLALGVLFLAGCASRAPVAVRDGNGVAPPPAAAPVADRAGVHVVRAGETLLGIARQYGQNVKDLVV
WNGLTNPNQIHVGQEIRVLPPDANAIPGGAVATPIPITSEPPVAVPVVPQPATAGALKLEPKGGKQPYSDELWARVRRSG
EPAAPVASEPRATQAPEQEPGDAEWLWPAKGKVLSGFNEATNKGIDISGNPGDAVVASAAGRVVYAGSGLRGYGKLVIIK
HNQEYNSVYAHNQKLLVKEDDQVSQGQKIAELGSTDADRPKLHFEIRKQGRPVDPMKFLSAR

Sequences:

>Translated_302_residues
MNDSVNIKKRIAPYFLALGVLFLAGCASRAPVAVRDGNGVAPPPAAAPVADRAGVHVVRAGETLLGIARQYGQNVKDLVV
WNGLTNPNQIHVGQEIRVLPPDANAIPGGAVATPIPITSEPPVAVPVVPQPATAGALKLEPKGGKQPYSDELWARVRRSG
EPAAPVASEPRATQAPEQEPGDAEWLWPAKGKVLSGFNEATNKGIDISGNPGDAVVASAAGRVVYAGSGLRGYGKLVIIK
HNQEYNSVYAHNQKLLVKEDDQVSQGQKIAELGSTDADRPKLHFEIRKQGRPVDPMKFLSAR
>Mature_302_residues
MNDSVNIKKRIAPYFLALGVLFLAGCASRAPVAVRDGNGVAPPPAAAPVADRAGVHVVRAGETLLGIARQYGQNVKDLVV
WNGLTNPNQIHVGQEIRVLPPDANAIPGGAVATPIPITSEPPVAVPVVPQPATAGALKLEPKGGKQPYSDELWARVRRSG
EPAAPVASEPRATQAPEQEPGDAEWLWPAKGKVLSGFNEATNKGIDISGNPGDAVVASAAGRVVYAGSGLRGYGKLVIIK
HNQEYNSVYAHNQKLLVKEDDQVSQGQKIAELGSTDADRPKLHFEIRKQGRPVDPMKFLSAR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=258, Percent_Identity=36.4341085271318, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI87082174, Length=287, Percent_Identity=32.7526132404181, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=40, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 31899; Mature: 31899

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSVNIKKRIAPYFLALGVLFLAGCASRAPVAVRDGNGVAPPPAAAPVADRAGVHVVRA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEC
GETLLGIARQYGQNVKDLVVWNGLTNPNQIHVGQEIRVLPPDANAIPGGAVATPIPITSE
CHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
PPVAVPVVPQPATAGALKLEPKGGKQPYSDELWARVRRSGEPAAPVASEPRATQAPEQEP
CCEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GDAEWLWPAKGKVLSGFNEATNKGIDISGNPGDAVVASAAGRVVYAGSGLRGYGKLVIIK
CCCCEECCCCCCEECCCHHHHCCCEEECCCCCCEEEEECCCCEEEECCCCCCCCEEEEEE
HNQEYNSVYAHNQKLLVKEDDQVSQGQKIAELGSTDADRPKLHFEIRKQGRPVDPMKFLS
ECCCCCCEEECCCEEEEECCCCHHCCHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHC
AR
CC
>Mature Secondary Structure
MNDSVNIKKRIAPYFLALGVLFLAGCASRAPVAVRDGNGVAPPPAAAPVADRAGVHVVRA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEC
GETLLGIARQYGQNVKDLVVWNGLTNPNQIHVGQEIRVLPPDANAIPGGAVATPIPITSE
CHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
PPVAVPVVPQPATAGALKLEPKGGKQPYSDELWARVRRSGEPAAPVASEPRATQAPEQEP
CCEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GDAEWLWPAKGKVLSGFNEATNKGIDISGNPGDAVVASAAGRVVYAGSGLRGYGKLVIIK
CCCCEECCCCCCEECCCHHHHCCCEEECCCCCCEEEEECCCCEEEECCCCCCCCEEEEEE
HNQEYNSVYAHNQKLLVKEDDQVSQGQKIAELGSTDADRPKLHFEIRKQGRPVDPMKFLS
ECCCCCCEEECCCEEEEECCCCHHCCHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]