Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 119897195

GI number: 119897195

Start: 967876

End: 969750

Strand: Reverse

Name: secD [H]

Synonym: azo0904

Alternate gene names: 119897195

Gene position: 969750-967876 (Counterclockwise)

Preceding gene: 119897196

Following gene: 119897194

Centisome position: 22.16

GC content: 67.73

Gene sequence:

>1875_bases
ATGAATCGCTATCCGCTCTGGAAGAACATCCTCATCGGTCTCGCCCTGCTGTGGGGCCTGATCTACACCTTGCCGAACTT
CTACGGCGAGGTTCCGGCGGTCCAGGTCTCCAGCGCAAAGGCCACGCTCAAGCTCGAACCGGCCAGCGTGACCGACCGCG
TCGCCGCGATCCTGCAGGGCGCCGGCATCGAGCACGACGGCATTTTCGCGGACGCCAACAGCGTGCGCGCCCGCTTCGCC
AGCACCGAACTCCAGCTGCGGGCCAAGGACGCGATCGAACGCGCGTTCAACACCGACCCGCAGGATCCCTCCTACGTCGT
CGCACTCAACCTGCTGTCGGCCTCGCCATCCTGGCTCACTTCCATCCACGCGCTGCCGATGTACCTTGGCCTCGACCTGC
GGGGCGGCGTGCATTTCCTGCTGCAGTTGGACATGCCCGGTGCGTTGCTCAAGCGCCTGGACGCGCTGTCGGGCGACCTG
CGCACGCTGATGCGCGACAAGAACGTGCGCCACGCCGGCATCACGCGCGAAGGCACCACGGTCGTCATCCGCTTCCGTGA
AGCGGCGCAGCGCGAGGCCGCCCGCTCGGCCATCCAGGGCAGCACCGCCGACCTGCAGCTGGTCGACCGCGACGACGGCA
GCGAGGACCTCAAACTGATCGCGACGCTGACGCCCCAGGCGCAGCAGACCATGCGTGAATACGCGATCAAGCAGAACATC
TCGACGCTGCACAACCGCATCAACGAACTCGGCGTCGCCGAGCCGGTGATCCAGCAACAGGGCGCGGAACGCATCGTCGT
CCAGCTGCCCGGCGTGCAGGACGTCGCCAAGGCCAAGGACATCCTCGGCCGCACCGCCACGCTGGAAGTGCGCATGGTCG
ACGACACCCCGGGCGCGCTGGAACAGGCCCTCACCGGCAACGTGCCCTTCGGCACCGAGCTGTACCGCGAGCGCGGCCGC
GGCCCGCTGCTGGTGAAGAAGCAGGTCGTCCTCACCGGCGAGCGCCTGACCGACGCCCAGCCCGGCTTCGACGGCCAGAC
CAACGAAGCCGCGGTCCACCTCACGCTCGACGCCGCGGGCGCCCGCATCTTCCGCGACCTCACGCGCGAGAACGTCGGCA
AGCGCATGGCCATCCTGCTGATCGAGAAGGGCAAGGGCGAGGTGGTCACCGCCCCGGTGATCCGCACCGAGATCGGCGGC
GGCCGGGTGCAGATTTCTGGCAGCATGAACACCGTCGAAGCCAACGACGTCGCGCTACTGCTGCGTGCAGGCAGCCTGGC
CGCGCCGATGGAGATCATCGAGGAACGCACCGTAGGCCCCAGCCTCGGCGCCGAGAACATCGCCAAGGGCTTCCACTCCA
CGCTGTGGGGCTTCGTCGCGATCGCGGTGTTCATGTGCGTCTACTACGCGGTGTTCGGTCTGGTCTCCACGCTGGCGCTC
GCCGCCAACCTGCTGCTGCTTGTGGCGCTGCTGTCGCTGCTGCAAGCCACGCTGACGCTGCCCGGCATCGCCGCGATGGC
GCTGGCGCTCGGCATGGCGATCGACGCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCAACGGCGTCAGCC
CGCAGGCCGCGATCGCAGCCGGCTATGACCGCGCCTTCAGCACCATTCTGGACTCCAGCGTCACCAGCCTGATCGCCGGT
ATCGCGCTGCTGGTGTTCGGCTCCGGCCCGGTGCGCGGCTTCGCGGTGGTTCACTGCCTGGGTCTGCTGACCTCGATGTT
CAGCGCGATCCTGGTGTCGCGGATGCTGATCAACCTGATCTACGGCCGTCGCCGCAAGATCGACAAGCTTGCCATCGGCC
AGGTGTGGAAGCCCGGCAACGTCGCCGGCAACTGA

Upstream 100 bases:

>100_bases
GGATCGCCACCCGGAGCACGGCCATCCTGCAACCGCAGGGCCGCGCTCCGCGCCTCCTCCCGGCCGCGCCGCGGCCTCAC
CTCTCCGTCTCCCTCCGACG

Downstream 100 bases:

>100_bases
GCGGACCCGAGGAACGCAACATGGAATTCTTCCGCATCAAGAAAGACATCCCGTTCATGCGCCACGCGCTGGTGTTCAAC
GTCATCTCGTTGATCACCTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MNRYPLWKNILIGLALLWGLIYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQGAGIEHDGIFADANSVRARFA
STELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSWLTSIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDL
RTLMRDKNVRHAGITREGTTVVIRFREAAQREAARSAIQGSTADLQLVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNI
STLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGALEQALTGNVPFGTELYRERGR
GPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAGARIFRDLTRENVGKRMAILLIEKGKGEVVTAPVIRTEIGG
GRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLAL
AANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAG
IALLVFGSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLIYGRRRKIDKLAIGQVWKPGNVAGN

Sequences:

>Translated_624_residues
MNRYPLWKNILIGLALLWGLIYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQGAGIEHDGIFADANSVRARFA
STELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSWLTSIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDL
RTLMRDKNVRHAGITREGTTVVIRFREAAQREAARSAIQGSTADLQLVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNI
STLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGALEQALTGNVPFGTELYRERGR
GPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAGARIFRDLTRENVGKRMAILLIEKGKGEVVTAPVIRTEIGG
GRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLAL
AANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAG
IALLVFGSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLIYGRRRKIDKLAIGQVWKPGNVAGN
>Mature_624_residues
MNRYPLWKNILIGLALLWGLIYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQGAGIEHDGIFADANSVRARFA
STELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSWLTSIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDL
RTLMRDKNVRHAGITREGTTVVIRFREAAQREAARSAIQGSTADLQLVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNI
STLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGALEQALTGNVPFGTELYRERGR
GPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAGARIFRDLTRENVGKRMAILLIEKGKGEVVTAPVIRTEIGG
GRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLAL
AANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAG
IALLVFGSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLIYGRRRKIDKLAIGQVWKPGNVAGN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=629, Percent_Identity=43.4022257551669, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67048; Mature: 67048

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKNILIGLALLWGLIYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHHHC
AGIEHDGIFADANSVRARFASTELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSWLT
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHH
SIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDLRTLMRDKNVRHAGITREGTT
HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
VVIRFREAAQREAARSAIQGSTADLQLVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNI
EEEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
STLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGAL
HHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCHHH
EQALTGNVPFGTELYRERGRGPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAG
HHHHCCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHH
ARIFRDLTRENVGKRMAILLIEKGKGEVVTAPVIRTEIGGGRVQISGSMNTVEANDVALL
HHHHHHHHHHHHCCEEEEEEEECCCCCEEECCCEEEECCCCEEEEECCCCEECCCCEEEE
LRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLAL
EECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLINERIREELRNGVSPQAAIAA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
GYDRAFSTILDSSVTSLIAGIALLVFGSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGRRRKIDKLAIGQVWKPGNVAGN
HHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKNILIGLALLWGLIYTLPNFYGEVPAVQVSSAKATLKLEPASVTDRVAAILQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHHHC
AGIEHDGIFADANSVRARFASTELQLRAKDAIERAFNTDPQDPSYVVALNLLSASPSWLT
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHH
SIHALPMYLGLDLRGGVHFLLQLDMPGALLKRLDALSGDLRTLMRDKNVRHAGITREGTT
HHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
VVIRFREAAQREAARSAIQGSTADLQLVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNI
EEEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
STLHNRINELGVAEPVIQQQGAERIVVQLPGVQDVAKAKDILGRTATLEVRMVDDTPGAL
HHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCHHH
EQALTGNVPFGTELYRERGRGPLLVKKQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAG
HHHHCCCCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHH
ARIFRDLTRENVGKRMAILLIEKGKGEVVTAPVIRTEIGGGRVQISGSMNTVEANDVALL
HHHHHHHHHHHHCCEEEEEEEECCCCCEEECCCEEEECCCCEEEEECCCCEECCCCEEEE
LRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLAL
EECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLINERIREELRNGVSPQAAIAA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
GYDRAFSTILDSSVTSLIAGIALLVFGSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGRRRKIDKLAIGQVWKPGNVAGN
HHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]