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The map label for this gene is yiaD [H]

Identifier: 119897129

GI number: 119897129

Start: 896956

End: 897630

Strand: Direct

Name: yiaD [H]

Synonym: azo0838

Alternate gene names: 119897129

Gene position: 896956-897630 (Clockwise)

Preceding gene: 119897128

Following gene: 119897133

Centisome position: 20.5

GC content: 72.15

Gene sequence:

>675_bases
ATGAAACGCATCGTCATCTCCCTCAGCTGCCTGTCCCTCGTTGCCGCCGGCCTGGGCGGCTGCGCCGGCATGAGCGATAC
GCAGCGGCATACCGGCACCGGCGCCGCGATCGGCGCGGCCGCGGGCGCGGTGCTCGGCGCCGCCACCTCGGGCAAGGGCA
ACCGCGGTGAGGCCACCGCGATCGGCGCGGCGGCCGGGGCCGCGATCGGCGCCGGCGGCGGCTACCTGTGGTCGCAGCGC
ATGCAGGCGCAGAAGGCCGAAATGGAGCGTGCCACCGCCGGCACCGGCGTCAGCGTGTCGCAGACGGCGGACAACCGGCT
CAAGCTCGACATCCCGAGCGACGTGTCCTTCGATACCGGGCGCTACGACATCAAGCCCGAGATGCGCCCGGTGCTCGACC
GCTTCGCCAACACGCTCAACCAGCACACGGTCACCACCGTCAGCATCATCGGCCACACCGACAGCACCGGCAGCGATGCG
GTGAACAACCCGCTGTCGGTGAATCGCGCTGCTGCCACCCGCGACTATCTGGTCGCGCGCGGCGTGGCGGGCAGCCGTAT
CGCCATCGACGGCCGCGGCGCGCGCGAGCCGATCGCCGACAACGGCACTGTGGCGGGGCGGGCGCAGAACCGGCGGGTGG
AAATCTTCGTCGCCGAACCCGCTGCGGCGCGCTGA

Upstream 100 bases:

>100_bases
TTTGTTGCATTCGCGCGCGAACCGCAAGGCGTCACGGCGCCAGAATCAACGGGCCGACCGAGAGTCGAAATATCACCACC
GAACAAGAACGGAGGCTCGC

Downstream 100 bases:

>100_bases
CTGTTCCAGCGGCTGCAGCGACGACACGGCCCGGCCCAGCCGGGCCGTTTGCGTTTACCCGGGCGGCAGCGGCGCCAGCA
GCGCGGCAATGTCGGCCTCG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKRIVISLSCLSLVAAGLGGCAGMSDTQRHTGTGAAIGAAAGAVLGAATSGKGNRGEATAIGAAAGAAIGAGGGYLWSQR
MQAQKAEMERATAGTGVSVSQTADNRLKLDIPSDVSFDTGRYDIKPEMRPVLDRFANTLNQHTVTTVSIIGHTDSTGSDA
VNNPLSVNRAAATRDYLVARGVAGSRIAIDGRGAREPIADNGTVAGRAQNRRVEIFVAEPAAAR

Sequences:

>Translated_224_residues
MKRIVISLSCLSLVAAGLGGCAGMSDTQRHTGTGAAIGAAAGAVLGAATSGKGNRGEATAIGAAAGAAIGAGGGYLWSQR
MQAQKAEMERATAGTGVSVSQTADNRLKLDIPSDVSFDTGRYDIKPEMRPVLDRFANTLNQHTVTTVSIIGHTDSTGSDA
VNNPLSVNRAAATRDYLVARGVAGSRIAIDGRGAREPIADNGTVAGRAQNRRVEIFVAEPAAAR
>Mature_224_residues
MKRIVISLSCLSLVAAGLGGCAGMSDTQRHTGTGAAIGAAAGAVLGAATSGKGNRGEATAIGAAAGAAIGAGGGYLWSQR
MQAQKAEMERATAGTGVSVSQTADNRLKLDIPSDVSFDTGRYDIKPEMRPVLDRFANTLNQHTVTTVSIIGHTDSTGSDA
VNNPLSVNRAAATRDYLVARGVAGSRIAIDGRGAREPIADNGTVAGRAQNRRVEIFVAEPAAAR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=222, Percent_Identity=40.0900900900901, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=33.0508474576271, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788957, Length=107, Percent_Identity=33.6448598130841, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22747; Mature: 22747

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVISLSCLSLVAAGLGGCAGMSDTQRHTGTGAAIGAAAGAVLGAATSGKGNRGEATA
CCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEE
IGAAAGAAIGAGGGYLWSQRMQAQKAEMERATAGTGVSVSQTADNRLKLDIPSDVSFDTG
ECHHHCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCC
RYDIKPEMRPVLDRFANTLNQHTVTTVSIIGHTDSTGSDAVNNPLSVNRAAATRDYLVAR
CEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GVAGSRIAIDGRGAREPIADNGTVAGRAQNRRVEIFVAEPAAAR
CCCCCEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKRIVISLSCLSLVAAGLGGCAGMSDTQRHTGTGAAIGAAAGAVLGAATSGKGNRGEATA
CCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEE
IGAAAGAAIGAGGGYLWSQRMQAQKAEMERATAGTGVSVSQTADNRLKLDIPSDVSFDTG
ECHHHCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCC
RYDIKPEMRPVLDRFANTLNQHTVTTVSIIGHTDSTGSDAVNNPLSVNRAAATRDYLVAR
CEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GVAGSRIAIDGRGAREPIADNGTVAGRAQNRRVEIFVAEPAAAR
CCCCCEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]