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The map label for this gene is rnk [H]

Identifier: 119897107

GI number: 119897107

Start: 871799

End: 872206

Strand: Reverse

Name: rnk [H]

Synonym: azo0816

Alternate gene names: 119897107

Gene position: 872206-871799 (Counterclockwise)

Preceding gene: 119897110

Following gene: 119897096

Centisome position: 19.93

GC content: 68.87

Gene sequence:

>408_bases
ATGAAGCCCGAAATCATCGTCTCGTCCCTCGATCTCGAACGCCTCGAAGGACTGCTTGCCGCACCTGCCGCGCGCAGCCG
CTGCGACCTTGACGCGCTGCGGGCCGAACTCGATCGCGCCGATGTGCGCGAGCCCGAGGAGATGCCCGCCGACGTGATCA
CGATGAACAGCCGCGCCCGTTTCCGCGAGGAAACCAGCGGCCGCGAGTACGAACTCACGCTGGCCTACCCCAAGGATGCC
GACGGTGCCGCCGGCAAGGTTTCGGTGTTTTCGCCCGCCGGCAGCGCGCTGCTCGGACTGGCAGCCGGTCAGGCGATCGA
CTGGCGCACGCCCGAAGGCAGCGCGATCCGTCTGCAGGTGCTGGAAGTGGTGTGGCAGCCCGAGGCGGCGGGCTGCCTCG
CGCTGTGA

Upstream 100 bases:

>100_bases
CGACGCCTTCTGTTAGCCTCCGGAGACTTGGCTGAACCGCCCCGGCGGCTCGGCCATTTTCTTTTGGTGCGCCCCTTTAA
CGTGAACAGGAGCCGGAGCC

Downstream 100 bases:

>100_bases
GGGGCGACCGGCCGCGGGGCCGGTCGCAGGCTCAACTCAGCCGGCGGACGCTGGCGCCGAGCGCGGCGAGCTTTTCTTCG
AGCCGCTCGTAGCCGCGGTC

Product: putative regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKPEIIVSSLDLERLEGLLAAPAARSRCDLDALRAELDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDA
DGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQVLEVVWQPEAAGCLAL

Sequences:

>Translated_135_residues
MKPEIIVSSLDLERLEGLLAAPAARSRCDLDALRAELDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDA
DGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQVLEVVWQPEAAGCLAL
>Mature_135_residues
MKPEIIVSSLDLERLEGLLAAPAARSRCDLDALRAELDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDA
DGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQVLEVVWQPEAAGCLAL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=130, Percent_Identity=49.2307692307692, Blast_Score=122, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14537; Mature: 14537

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPEIIVSSLDLERLEGLLAAPAARSRCDLDALRAELDRADVREPEEMPADVITMNSRAR
CCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHH
FREETSGREYELTLAYPKDADGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQV
HHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHCCCEEECCCCCCCEEEEEE
LEVVWQPEAAGCLAL
EEHHCCCCCCCCCCC
>Mature Secondary Structure
MKPEIIVSSLDLERLEGLLAAPAARSRCDLDALRAELDRADVREPEEMPADVITMNSRAR
CCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHH
FREETSGREYELTLAYPKDADGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQV
HHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHCCCEEECCCCCCCEEEEEE
LEVVWQPEAAGCLAL
EEHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]