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The map label for this gene is gspD1 [H]

Identifier: 119897096

GI number: 119897096

Start: 862681

End: 864423

Strand: Reverse

Name: gspD1 [H]

Synonym: azo0805

Alternate gene names: 119897096

Gene position: 864423-862681 (Counterclockwise)

Preceding gene: 119897107

Following gene: 119897095

Centisome position: 19.75

GC content: 67.58

Gene sequence:

>1743_bases
ATGTTGCTCACCGGCAACGCCAGCCCGACGCGCGGCATTCACGACGGGCTTTCCGCGCGCGTCCCGAAGCGACCCGAAAT
ATCTTTTTGTCATTTGCGGATTCACCCCCTAGAATGCCGCGTCTATTCATTTGCCATATCCGCGAACACGCCGATGCGTC
CTCAGCCGATCACCGCCGTGCTTGCCGCGCTGCTCGCGGCGGCGTGCGCGCCGCTCCAGGCGCCGCCGGCGCTGGGCCAT
CTCGGCACTACGCCGGCAACAGCCGTGCTCGCGCCCATCCCTGCACCCGCACCCGGCGCCCTCACGCTTCCGCCGCCGCG
CCCCGCCGCTGCGGAAGAGACCTATTCGATCGTGGTCAACAAGGTGCCGGTGGAATCCCTGCTGTTTTCCCTGGCACGCG
AAAGCGGACTGGAGATCGACCTGCATCCGGCCCTGCAAGGCACGGTCACGCTCAATGCGGTCAACCAGCCGCTGCGCCAG
TTGCTGGAACGCATCGCCCGCCAGGTGGACATGCGCTTCGAACTGGAGGGTCGCCACCTCACCGTGATGCCCGACGCCGC
CTTCCACCGCACCTACCGGCTCGACTACGTCAACCTCACCCGCGGCATGACCGGCACCGTCGCCACCAGCACCCAGATCG
CCACCTCGTCGTCGGCGCTCGGCGCTGCCCGCACCAGCGGCGGCAACGCCTCGATCACGCAGATCGAATCGACCTCCGCG
AACCGCTTCTGGGAGTCGCTGGAAGCCAACCTGCGCGCCATCCTCGAACTGGGCAAGGATGCCGACGCCGTGGTGAGCAA
CCGCGAAAGCGGTGTCCTGGTCGTGCGCGCCACTGCGCGCCAGCACAGCCGCATCGCCGAGTTCATCGATGCGGTGCAGC
GTGCGGCGCGCCGCCAGGTGATGATCGAAGCCACCATCGTCGAAGTCGCGCTCGGCGACGAGTACCAGCAGGGCATCGAC
TGGCGGCGCCTCGGCAACCCCAACTGGCGGGTCGCCGCGCGTGGCAGCGGCGACGCGAACGCACTGACGCCCACCCTGAG
CTACCTCTCCGACCGCCTCGACGTGCGGCTGGACCTTCTCGAAACCTTCGGCAGCGCCAAAATCCTGTCCAGCCCGCGGC
TCTCGGTGCTCAACAACCAGACGGCCATGCTGAAAGTCGTCGAGGAGGTGGTGTATTTCCTGGTGGACGCCTCCACCACC
CAGTACGACGACGCCGACCGCGAGAAGACCACCGCGACGACGACACCGCAGTCGGTGTCGGTCGGCATGGTGATGGCGCT
CACCGCGCAGGTCAGCGCGGGCGGCGAAATCATCCTCAACGTGCGCCCGACGATCTCCAGCATCTCCGGCTTCAAGGACG
ATCCCAACCCCTCGCTCGGCAGCATTCCCAACCGCGTGCCGCAGATCCGCACGCGCGAGATCGAATCCGTGCTGCGGCTG
CGCAGCGGCGAAACCGCGGTGCTTGGCGGGCTGATCGAGGACAAGGTCGATTACGACACCGGACGCATTCCGCTGCTCGG
AAGCCTTCCACTGCTCGGTGAGGTCTTCAGCCACCGCGACAACGCCGTGCGGCGCAGCGAACTCGTGATCTTCCTGCGGC
CGGTGGTGGTCGAAGACCCCGCGCTCGGCGGCGACTACGCCGAACTGCGCCAGCATCTGCCGGACGCCGGCTTCTTCGAC
ATCGGCCACCCCCATGGCACCCCGTTGCGGGTGCGGGCAAACCCGGGACTAGGCCAGCCGTGA

Upstream 100 bases:

>100_bases
GGAGGACGGGACGGGGACGGGCGGCATTGGGGCGGACGATTCCTGGACGCTCGGAAAACGGCGCAGTTTAACAGAGCGCC
GCCGGACGACGCCCGGGCGG

Downstream 100 bases:

>100_bases
AGCGCCTGCCCCCGTCCCGGCTCCCCGGTTCCCGCCCCCGCCCCTCGCCGCGGGCGGCGACGGCGGTGCTTCTCGCCGTG
CTGGCTTTATGCACCGCTCG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MLLTGNASPTRGIHDGLSARVPKRPEISFCHLRIHPLECRVYSFAISANTPMRPQPITAVLAALLAAACAPLQAPPALGH
LGTTPATAVLAPIPAPAPGALTLPPPRPAAAEETYSIVVNKVPVESLLFSLARESGLEIDLHPALQGTVTLNAVNQPLRQ
LLERIARQVDMRFELEGRHLTVMPDAAFHRTYRLDYVNLTRGMTGTVATSTQIATSSSALGAARTSGGNASITQIESTSA
NRFWESLEANLRAILELGKDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGID
WRRLGNPNWRVAARGSGDANALTPTLSYLSDRLDVRLDLLETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTT
QYDDADREKTTATTTPQSVSVGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRL
RSGETAVLGGLIEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQHLPDAGFFD
IGHPHGTPLRVRANPGLGQP

Sequences:

>Translated_580_residues
MLLTGNASPTRGIHDGLSARVPKRPEISFCHLRIHPLECRVYSFAISANTPMRPQPITAVLAALLAAACAPLQAPPALGH
LGTTPATAVLAPIPAPAPGALTLPPPRPAAAEETYSIVVNKVPVESLLFSLARESGLEIDLHPALQGTVTLNAVNQPLRQ
LLERIARQVDMRFELEGRHLTVMPDAAFHRTYRLDYVNLTRGMTGTVATSTQIATSSSALGAARTSGGNASITQIESTSA
NRFWESLEANLRAILELGKDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGID
WRRLGNPNWRVAARGSGDANALTPTLSYLSDRLDVRLDLLETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTT
QYDDADREKTTATTTPQSVSVGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRL
RSGETAVLGGLIEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQHLPDAGFFD
IGHPHGTPLRVRANPGLGQP
>Mature_580_residues
MLLTGNASPTRGIHDGLSARVPKRPEISFCHLRIHPLECRVYSFAISANTPMRPQPITAVLAALLAAACAPLQAPPALGH
LGTTPATAVLAPIPAPAPGALTLPPPRPAAAEETYSIVVNKVPVESLLFSLARESGLEIDLHPALQGTVTLNAVNQPLRQ
LLERIARQVDMRFELEGRHLTVMPDAAFHRTYRLDYVNLTRGMTGTVATSTQIATSSSALGAARTSGGNASITQIESTSA
NRFWESLEANLRAILELGKDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGID
WRRLGNPNWRVAARGSGDANALTPTLSYLSDRLDVRLDLLETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTT
QYDDADREKTTATTTPQSVSVGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRL
RSGETAVLGGLIEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQHLPDAGFFD
IGHPHGTPLRVRANPGLGQP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=312, Percent_Identity=25.6410256410256, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1789793, Length=185, Percent_Identity=28.1081081081081, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 62449; Mature: 62449

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTGNASPTRGIHDGLSARVPKRPEISFCHLRIHPLECRVYSFAISANTPMRPQPITAV
CEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHH
LAALLAAACAPLQAPPALGHLGTTPATAVLAPIPAPAPGALTLPPPRPAAAEETYSIVVN
HHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCEECCCCCCCCCCCCEEEEEE
KVPVESLLFSLARESGLEIDLHPALQGTVTLNAVNQPLRQLLERIARQVDMRFELEGRHL
CCCHHHHHHHHHHHCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCEE
TVMPDAAFHRTYRLDYVNLTRGMTGTVATSTQIATSSSALGAARTSGGNASITQIESTSA
EECCCHHHHHEEEEEEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCH
NRFWESLEANLRAILELGKDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQV
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHEE
MIEATIVEVALGDEYQQGIDWRRLGNPNWRVAARGSGDANALTPTLSYLSDRLDVRLDLL
EEEEEEEEEEECCHHHHCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVS
HHCCCCEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRL
HHEEEEEEEEECCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RSGETAVLGGLIEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDP
CCCCCEEECCHHHCCCCCCCCCCCEEECCHHHHHHHHCCCCCHHHCCEEEEEECEEEECC
ALGGDYAELRQHLPDAGFFDIGHPHGTPLRVRANPGLGQP
CCCCCHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MLLTGNASPTRGIHDGLSARVPKRPEISFCHLRIHPLECRVYSFAISANTPMRPQPITAV
CEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHH
LAALLAAACAPLQAPPALGHLGTTPATAVLAPIPAPAPGALTLPPPRPAAAEETYSIVVN
HHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCEECCCCCCCCCCCCEEEEEE
KVPVESLLFSLARESGLEIDLHPALQGTVTLNAVNQPLRQLLERIARQVDMRFELEGRHL
CCCHHHHHHHHHHHCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCEE
TVMPDAAFHRTYRLDYVNLTRGMTGTVATSTQIATSSSALGAARTSGGNASITQIESTSA
EECCCHHHHHEEEEEEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCH
NRFWESLEANLRAILELGKDADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQV
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHEE
MIEATIVEVALGDEYQQGIDWRRLGNPNWRVAARGSGDANALTPTLSYLSDRLDVRLDLL
EEEEEEEEEEECCHHHHCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
ETFGSAKILSSPRLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVS
HHCCCCEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
VGMVMALTAQVSAGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRL
HHEEEEEEEEECCCCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RSGETAVLGGLIEDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDP
CCCCCEEECCHHHCCCCCCCCCCCEEECCHHHHHHHHCCCCCHHHCCEEEEEECEEEECC
ALGGDYAELRQHLPDAGFFDIGHPHGTPLRVRANPGLGQP
CCCCCHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]