Click here to switch to the map view.

The map label for this gene is ychF [H]

Identifier: 119897043

GI number: 119897043

Start: 804105

End: 805196

Strand: Reverse

Name: ychF [H]

Synonym: azo0752

Alternate gene names: 119897043

Gene position: 805196-804105 (Counterclockwise)

Preceding gene: 119897044

Following gene: 119897039

Centisome position: 18.4

GC content: 65.57

Gene sequence:

>1092_bases
ATGAGCCTGAAATGCGGAATCGTCGGCCTGCCCAACGTCGGCAAGTCGACCCTGTTCAACGCCCTCACCAAGGCCGGTAT
CGAAGCGGCGAACTACCCCTTCTGCACGATCGAGCCCAACGTCGGCATCGTCGAGGTGCCGGACCCGCGTCTCGCGGCGC
TGTCCGAGATCGTCAAGCCGCAGAAGATCCAGCCCGCCATCGTCGAGTTCGTCGACATCGCCGGTCTGGTCGCGGGTGCG
TCCAAGGGTGAAGGTCTCGGCAACCAGTTCCTCGCCAACATCCGCGAGACCGACGCGATCGTGCACGTGGTGCGCTGCTT
TGCCGACGACAACGTGGTGCATGTGTCCGGCAGCGTCGATCCGATCCGCGACATCGAGGTCATCGACACCGAACTCGCAC
TGGCCGACATGGCCACGGTGGAGAAGGCGCTCAATCGCTACAAGCGCCCTGCCGCCGCCGGCGACAAGGATGCCAAGGTG
CTGGTCGCCGTGCTAGAAAAGTGTTTCGCCCAGCTCGACACCGGCAAGCCGGTGCGTGCGCTCGACCTCTCCAGGGAAGA
GCTGGCGAGCATCAAGCAGTTCTGCCTGATCACGCAGAAGCCGGTGCTGTACGCCGCCAACGTGGCCGAGGACGGCTTCG
AGAACAACCCGCACCTGGATGCGGTGCGCGCCCACGCCGCCGCAGAGGGCGCCGAGGTGGTCGCGCTGTGCGCCGCCATC
GAAGCCGAGATCGCCGACCTGGACGACGCCGACAAGAAGGACTTCCTGGAATCCATGGGCCTCGAAGAGCCCGGCCTCGA
CCGCCTGATCCGAGCCGGCTACAAGCTGCTCGGCCTGCAGACCTACTTCACCGCCGGGGTGAAGGAAGTACGCGCCTGGA
CCATCCACGTCGGCGACACCGCGCCGCAGGCCGCCGGGGTGATCCACACCGACTTCGAGCGCGGCTTCATCCGCGCGCAG
ACGATCGCTTTCGACGACTTCATCGCCTTCAAGGGCGAGGCCGGCGCCAAGGAAGCGGGCAAGATGCGCGCGGAAGGCAA
GGACTACGTGGTGAAGGACGGCGACGTGCTGAACTTCCTGTTCAACGTCTGA

Upstream 100 bases:

>100_bases
CCCAGCGGCTCAACGCCCGCCCCGCGCCCCCCAAACCGCCCAAGGCCCCGAAGGCGCCCCAGCCCGCCGCGGCCGACCAA
CCCAAGGACGAATCCCAGCC

Downstream 100 bases:

>100_bases
CCGCCGCCCGTTCCCGCCCACGCCCCGCCGGCACCGCCCGCGGGGCGTTTTTCATTCTCCGGCCGGGGGGCGTGCGCCGA
AGGTCCACAGCGCGTTGGCG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIVEVPDPRLAALSEIVKPQKIQPAIVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAIVHVVRCFADDNVVHVSGSVDPIRDIEVIDTELALADMATVEKALNRYKRPAAAGDKDAKV
LVAVLEKCFAQLDTGKPVRALDLSREELASIKQFCLITQKPVLYAANVAEDGFENNPHLDAVRAHAAAEGAEVVALCAAI
EAEIADLDDADKKDFLESMGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAWTIHVGDTAPQAAGVIHTDFERGFIRAQ
TIAFDDFIAFKGEAGAKEAGKMRAEGKDYVVKDGDVLNFLFNV

Sequences:

>Translated_363_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIVEVPDPRLAALSEIVKPQKIQPAIVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAIVHVVRCFADDNVVHVSGSVDPIRDIEVIDTELALADMATVEKALNRYKRPAAAGDKDAKV
LVAVLEKCFAQLDTGKPVRALDLSREELASIKQFCLITQKPVLYAANVAEDGFENNPHLDAVRAHAAAEGAEVVALCAAI
EAEIADLDDADKKDFLESMGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAWTIHVGDTAPQAAGVIHTDFERGFIRAQ
TIAFDDFIAFKGEAGAKEAGKMRAEGKDYVVKDGDVLNFLFNV
>Mature_362_residues
SLKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIVEVPDPRLAALSEIVKPQKIQPAIVEFVDIAGLVAGAS
KGEGLGNQFLANIRETDAIVHVVRCFADDNVVHVSGSVDPIRDIEVIDTELALADMATVEKALNRYKRPAAAGDKDAKVL
VAVLEKCFAQLDTGKPVRALDLSREELASIKQFCLITQKPVLYAANVAEDGFENNPHLDAVRAHAAAEGAEVVALCAAIE
AEIADLDDADKKDFLESMGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAWTIHVGDTAPQAAGVIHTDFERGFIRAQT
IAFDDFIAFKGEAGAKEAGKMRAEGKDYVVKDGDVLNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=43.0894308943089, Blast_Score=295, Evalue=4e-80,
Organism=Homo sapiens, GI58761502, Length=216, Percent_Identity=36.5740740740741, Blast_Score=143, Evalue=3e-34,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=72.1763085399449, Blast_Score=548, Evalue=1e-157,
Organism=Escherichia coli, GI1789574, Length=141, Percent_Identity=29.0780141843972, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=41.8032786885246, Blast_Score=293, Evalue=1e-79,
Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=39.5663956639566, Blast_Score=251, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=32.9815303430079, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6321649, Length=193, Percent_Identity=33.6787564766839, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=42.5068119891008, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=42.5068119891008, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=42.5068119891008, Blast_Score=290, Evalue=1e-78,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=40.3076923076923, Blast_Score=234, Evalue=5e-62,
Organism=Drosophila melanogaster, GI24585318, Length=137, Percent_Identity=32.1167883211679, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 38905; Mature: 38774

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIVEVPDPRLAALSEIVKP
CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
QKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVHVVRCFADDNVVHVSGSVD
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIRDIEVIDTELALADMATVEKALNRYKRPAAAGDKDAKVLVAVLEKCFAQLDTGKPVRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
LDLSREELASIKQFCLITQKPVLYAANVAEDGFENNPHLDAVRAHAAAEGAEVVALCAAI
ECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
EAEIADLDDADKKDFLESMGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAWTIHVGDT
HHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEECCC
APQAAGVIHTDFERGFIRAQTIAFDDFIAFKGEAGAKEAGKMRAEGKDYVVKDGDVLNFL
CCCCCCCEEECCCCCEEEEEEEEEHHHHEECCCCCCHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC
>Mature Secondary Structure 
SLKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNVGIVEVPDPRLAALSEIVKP
CCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
QKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVHVVRCFADDNVVHVSGSVD
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIRDIEVIDTELALADMATVEKALNRYKRPAAAGDKDAKVLVAVLEKCFAQLDTGKPVRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
LDLSREELASIKQFCLITQKPVLYAANVAEDGFENNPHLDAVRAHAAAEGAEVVALCAAI
ECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
EAEIADLDDADKKDFLESMGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAWTIHVGDT
HHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHEEEEEEEECCC
APQAAGVIHTDFERGFIRAQTIAFDDFIAFKGEAGAKEAGKMRAEGKDYVVKDGDVLNFL
CCCCCCCEEECCCCCEEEEEEEEEHHHHEECCCCCCHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]