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The map label for this gene is rnfB1 [H]

Identifier: 119896807

GI number: 119896807

Start: 551561

End: 552088

Strand: Reverse

Name: rnfB1 [H]

Synonym: azo0516

Alternate gene names: 119896807

Gene position: 552088-551561 (Counterclockwise)

Preceding gene: 119896808

Following gene: 119896806

Centisome position: 12.62

GC content: 70.83

Gene sequence:

>528_bases
ATGTTGATCGCAGTTACCAGCGTCGCCCTGATCGGGGCCTTCTGTGGCGTGGCGCTCGGCGTCGCGGCGCGCCGCTTCTA
CGTCGAGCCCGACAGCGCGGTGGCGGAAATCGAAGCCATGATGCCCGGCTCCCAGTGCGGCCAGTGCGGCTTCCCGGGCT
GTGCCGGCGCAGCCGCGGCGATCGTCGCCGGCGAGGCCCCGGTCACCTGTTGCCCGCCGGGCGGCAAGGCGCTCGCCGTC
GCCCTGGCCGAAAAGCTCGGCATCACGGTCGATACCTCGGGCATGAGCGACGACGGCCCCCGGATCGCCGGCGTCACCGA
GGAAATCTGCATCGGCTGCACCAAGTGCTACAAGTCCTGCCCCACCGACGCCATCCTCGGCGCGGTCAAGCAGGTCCACA
CCGTGATCCGCGACGCCTGCACCGGCTGCGCCAAGTGCGAGGACGTCTGCCCCACCGGCGCGATCACGCTGTCGCCCATC
CCGGTCACCCAGCAGAGCTGGGTGTGGCCCAAGCCTGTCGCCGCCTGA

Upstream 100 bases:

>100_bases
TCTCCGGCGCGCCGATCAGCTTCATCACCGCCGGCCTGCTGTCGCTCGCCTTCATGGGCTTTGCCGGCCTCACCAACCAC
TGAATCCCGGGAGCACGAAG

Downstream 100 bases:

>100_bases
GGATACGAACATGGGCTCGCCCTCCATTCCGCCCCTTGCCCGTCTCGCCCGCCTGCTCAATCCCTGGGGCGTGCACCCCG
AAGGCCGCAAGCAGCTCACC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MLIAVTSVALIGAFCGVALGVAARRFYVEPDSAVAEIEAMMPGSQCGQCGFPGCAGAAAAIVAGEAPVTCCPPGGKALAV
ALAEKLGITVDTSGMSDDGPRIAGVTEEICIGCTKCYKSCPTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPI
PVTQQSWVWPKPVAA

Sequences:

>Translated_175_residues
MLIAVTSVALIGAFCGVALGVAARRFYVEPDSAVAEIEAMMPGSQCGQCGFPGCAGAAAAIVAGEAPVTCCPPGGKALAV
ALAEKLGITVDTSGMSDDGPRIAGVTEEICIGCTKCYKSCPTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPI
PVTQQSWVWPKPVAA
>Mature_175_residues
MLIAVTSVALIGAFCGVALGVAARRFYVEPDSAVAEIEAMMPGSQCGQCGFPGCAGAAAAIVAGEAPVTCCPPGGKALAV
ALAEKLGITVDTSGMSDDGPRIAGVTEEICIGCTKCYKSCPTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPI
PVTQQSWVWPKPVAA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=173, Percent_Identity=45.0867052023121, Blast_Score=147, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 17560; Mature: 17560

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
8.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAVTSVALIGAFCGVALGVAARRFYVEPDSAVAEIEAMMPGSQCGQCGFPGCAGAAAA
CEEEHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
IVAGEAPVTCCPPGGKALAVALAEKLGITVDTSGMSDDGPRIAGVTEEICIGCTKCYKSC
HEECCCCEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCC
PTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPIPVTQQSWVWPKPVAA
CHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIAVTSVALIGAFCGVALGVAARRFYVEPDSAVAEIEAMMPGSQCGQCGFPGCAGAAAA
CEEEHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
IVAGEAPVTCCPPGGKALAVALAEKLGITVDTSGMSDDGPRIAGVTEEICIGCTKCYKSC
HEECCCCEEEECCCCHHHHHHHHHHHCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCC
PTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPIPVTQQSWVWPKPVAA
CHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA