Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 119896786

GI number: 119896786

Start: 530568

End: 531536

Strand: Reverse

Name: ybjT [H]

Synonym: azo0495

Alternate gene names: 119896786

Gene position: 531536-530568 (Counterclockwise)

Preceding gene: 119896787

Following gene: 119896785

Centisome position: 12.15

GC content: 72.34

Gene sequence:

>969_bases
ATGAAATCGACCCGCGTCGTCCTGATCGGCGGCTCCGGCTTTGTCGGCAGCGTGATCGCCAACCGCCTGAGCGCCGCCGC
CATCGACCTCTGCATCCCGACCCGCCGTCCCGCGCGTGCCGCCCACCTGCTGCCGCTGCCGACCGCCCAGATCCTCGAAG
CCGACGTGCACGACCCGGTCACGCTCGCGCGCCTGCTCGAAGGGGCCGACGCGGTGGTGAATCTGGTCGGCATCCTGCAC
TCGCGCCCGGGTTCTCCCTACGGGCGGGACTTCGCGCGGGCGCACGTCGAGTTGCCGCGCAAGCTGGTGAGCGCCTGCCG
CAGCGCCGGCGTACGCCAGCTGATCCACATCAGCGCGCTCGGCGCCAACCCCGACGGCCCCTCCGAGTATCAGCGCTCCA
AGGCCGCCGGCGAGGCCGAAATCCACGCCGCCGGCGACGATGTGATGTGGACCGTGCTGCGCCCCTCGGTCATCTTCGGC
CGCGCCGACCGCTTCCTCAACCTCTTCGCCGACCTCGCGCGCACGCTGCCCGTGCTGCCCCTGGCGGGCGCCCGTACCCG
CTTCCAGCCGGTGTATGTGGAGGATGTCGCCGAGGTCGTGTGGCGCTGTCTCGGCGACCCGGCCTGCGCGCGCGAAACCT
TCGAAGTGGCCGGTCCCACGGTGTATACGCTGCGCGAACTGGTCGAGTACGTCTCCGCGCTCGCCGGCCATCCGCGACCG
GTGATCGCGCTGCCGGAGGGCGTCGCGATGCTGCAGGCGCGCCTGATGAGCCTGCTGCCGCAGCCGCTGATCAGCCCCGA
CAACATCCGCTCGATGCGGGTGGACAACGTCGCCAGCGGCGCGCCGCTTCCTTTCGGCCTGCGCCCCACCGCGGTGGAGG
AAGCGGCGCCCGAATGGATTGCGCCGCGCGTGTCGCCGCGCGCCCACTTCGACGAGTTCCGCCGCCGCGCGAGCCGCCCG
CGGGGATGA

Upstream 100 bases:

>100_bases
CAACACCGTGATCTACGCGGCGATGCTCGAAGGCCGGCCGCAGTCGCTGAAGACCCGGCTGGGCACCATCGCCGCACGCA
ACTGAGGAGAGGAAACCGCG

Downstream 100 bases:

>100_bases
CGTTGGCCTCGGCACGGTGCTAAGGTGGCGGCCATTCCCGCAGTGGCTGCACCCTTCCCGTTCCCCCTCCCGGAGTCGGC
ATGAAACTCATCATCGGCAA

Product: putative NADH dehydrogenase

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKSTRVVLIGGSGFVGSVIANRLSAAAIDLCIPTRRPARAAHLLPLPTAQILEADVHDPVTLARLLEGADAVVNLVGILH
SRPGSPYGRDFARAHVELPRKLVSACRSAGVRQLIHISALGANPDGPSEYQRSKAAGEAEIHAAGDDVMWTVLRPSVIFG
RADRFLNLFADLARTLPVLPLAGARTRFQPVYVEDVAEVVWRCLGDPACARETFEVAGPTVYTLRELVEYVSALAGHPRP
VIALPEGVAMLQARLMSLLPQPLISPDNIRSMRVDNVASGAPLPFGLRPTAVEEAAPEWIAPRVSPRAHFDEFRRRASRP
RG

Sequences:

>Translated_322_residues
MKSTRVVLIGGSGFVGSVIANRLSAAAIDLCIPTRRPARAAHLLPLPTAQILEADVHDPVTLARLLEGADAVVNLVGILH
SRPGSPYGRDFARAHVELPRKLVSACRSAGVRQLIHISALGANPDGPSEYQRSKAAGEAEIHAAGDDVMWTVLRPSVIFG
RADRFLNLFADLARTLPVLPLAGARTRFQPVYVEDVAEVVWRCLGDPACARETFEVAGPTVYTLRELVEYVSALAGHPRP
VIALPEGVAMLQARLMSLLPQPLISPDNIRSMRVDNVASGAPLPFGLRPTAVEEAAPEWIAPRVSPRAHFDEFRRRASRP
RG
>Mature_322_residues
MKSTRVVLIGGSGFVGSVIANRLSAAAIDLCIPTRRPARAAHLLPLPTAQILEADVHDPVTLARLLEGADAVVNLVGILH
SRPGSPYGRDFARAHVELPRKLVSACRSAGVRQLIHISALGANPDGPSEYQRSKAAGEAEIHAAGDDVMWTVLRPSVIFG
RADRFLNLFADLARTLPVLPLAGARTRFQPVYVEDVAEVVWRCLGDPACARETFEVAGPTVYTLRELVEYVSALAGHPRP
VIALPEGVAMLQARLMSLLPQPLISPDNIRSMRVDNVASGAPLPFGLRPTAVEEAAPEWIAPRVSPRAHFDEFRRRASRP
RG

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=276, Percent_Identity=32.6086956521739, Blast_Score=135, Evalue=5e-32,
Organism=Escherichia coli, GI87081793, Length=242, Percent_Identity=29.3388429752066, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17556106, Length=245, Percent_Identity=26.9387755102041, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24667554, Length=324, Percent_Identity=29.6296296296296, Blast_Score=112, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 34755; Mature: 34755

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTRVVLIGGSGFVGSVIANRLSAAAIDLCIPTRRPARAAHLLPLPTAQILEADVHDPV
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHCCCCHH
TLARLLEGADAVVNLVGILHSRPGSPYGRDFARAHVELPRKLVSACRSAGVRQLIHISAL
HHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
GANPDGPSEYQRSKAAGEAEIHAAGDDVMWTVLRPSVIFGRADRFLNLFADLARTLPVLP
CCCCCCHHHHHHHHCCCCCEEEECCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
LAGARTRFQPVYVEDVAEVVWRCLGDPACARETFEVAGPTVYTLRELVEYVSALAGHPRP
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
VIALPEGVAMLQARLMSLLPQPLISPDNIRSMRVDNVASGAPLPFGLRPTAVEEAAPEWI
EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCHHC
APRVSPRAHFDEFRRRASRPRG
CCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSTRVVLIGGSGFVGSVIANRLSAAAIDLCIPTRRPARAAHLLPLPTAQILEADVHDPV
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHCCCCHH
TLARLLEGADAVVNLVGILHSRPGSPYGRDFARAHVELPRKLVSACRSAGVRQLIHISAL
HHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
GANPDGPSEYQRSKAAGEAEIHAAGDDVMWTVLRPSVIFGRADRFLNLFADLARTLPVLP
CCCCCCHHHHHHHHCCCCCEEEECCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
LAGARTRFQPVYVEDVAEVVWRCLGDPACARETFEVAGPTVYTLRELVEYVSALAGHPRP
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
VIALPEGVAMLQARLMSLLPQPLISPDNIRSMRVDNVASGAPLPFGLRPTAVEEAAPEWI
EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCHHC
APRVSPRAHFDEFRRRASRPRG
CCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]