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The map label for this gene is ydaM [H]

Identifier: 119896627

GI number: 119896627

Start: 360237

End: 361499

Strand: Direct

Name: ydaM [H]

Synonym: azo0336

Alternate gene names: 119896627

Gene position: 360237-361499 (Clockwise)

Preceding gene: 119896626

Following gene: 119896629

Centisome position: 8.23

GC content: 70.63

Gene sequence:

>1263_bases
GTGAGCAGCCAGCGCGAGAAACTGCTCGAAGCCGCGGTTGCACAGTCGTTCAACGCGGTCGTGATCACCGACGCCCGCCT
GGATGGCGGCGGCCCCCACATCGTCTATGTGAATCGCGCCTTCTGCGAGATGACCGGCTATGCGGCGGAGGACCTGATCG
GCCAGTCGCCGCGCATCCTGCAGGGACCGGACACCGACCCCGAGGTGATCGACCGCCTGCGCACGGCGCTGCGCAGCGGC
AGCTTCTTCGAGGGCGCGACGGTGAATTACCGGCGCGACGGTTCGGCCTACGACGTGGAGTGGAACATCTCGCCGGTGCG
TGACGATGGCGGTGAGCTGAGCCACTTCGTCTCGGTGCAGCACAACATCAGCGATAAGATGTGGATGCGGCGCGAGCGCG
ACCTGCTCGCGCAGGCGCTCAACGTCGCGAGCGATCCGATCATCGTCACCGACCGCGGCGGCGCCATCGTCTTCGTCAAT
CAGGCGTTCGAGCGCCTGACCGGCTATCCCGCCGACGAGATGCTCGGCCGCACGCCCGCAGTGCTGCGCTCGGGCGCGCA
CGACGCGGCCTTCTACAGCGGGCTGTATGCCGCCCTCGCGCGCGGACGGCCGTTCCGCGCCACCTTCACCAACCGGCGCA
AGGACGGCTCGCTGTTCCATGCCGAGCAGAGCATCGCCCCGCTGTGCGACGGCGAAGGCGAGGTCACCCATTTCGTCAGC
GTCAGCAAGGACCTCACCGAGCGCATCGAGCGCGAGCGCGCGCTGCAGGAGATCGCCAGCCGCGATCCGCTCACCGGGCT
CTACAACCGCCGCGCCGGCGAACAGGCGCTGGAACTCCAGGTGCAGGCCGCCCATGCGGAGGGCACGGCGCTCAGCCTCA
TCATCGGTGACATCGACCACTTCAAGTCGATCAACGACCGTCACGGCCATCCGGCGGGCGACCGTGTGCTGGCCGGCGTG
GGCGAGGCGCTGCGGGGCGCGGTGCGGTCGCGCGATCTGGCGGTGCGCTGGGGCGGGGAGGAGTTCGTGGTGCTGGTGCC
CGAGTGCGGCGCGGCGCGCGCGCTGGAACTGGCGGAGCGACTGCGCAGCAGCGTGGCGGGCTTGCAGTTTCCCGCCGTCG
GCCGGGTGACGATGTCGCTCGGGCTGGCCACGCTGGTGGCGGGCGAAACCGCGGCGGGCCTGGTGATGCGCGCCGACCGC
GCGCTGTACCGCGCCAAGCACGGCGGGCGCGACCGGGTGGAGACCGCGGCCGCGCTGGATTGA

Upstream 100 bases:

>100_bases
TGATGCAGGGCTTCCTGTTCTGCCGTCCCTTGTTCGAAGGCGTGGGCGAGGCCGCCACGCTCGCGTGGCCCGCGCTTGCG
CCGCAGGCCGGAGGACGGCA

Downstream 100 bases:

>100_bases
GCGGGGCGGCGCCGCCGCCCCTGGGCAAGACCGGATCAGCCGGCGCGGCGGCGGTCGGCGAAGTCGATATGGCGCACGTT
CTGGCGGCGCTCGACCAACG

Product: PAS/PAC/GGDEF-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSSQREKLLEAAVAQSFNAVVITDARLDGGGPHIVYVNRAFCEMTGYAAEDLIGQSPRILQGPDTDPEVIDRLRTALRSG
SFFEGATVNYRRDGSAYDVEWNISPVRDDGGELSHFVSVQHNISDKMWMRRERDLLAQALNVASDPIIVTDRGGAIVFVN
QAFERLTGYPADEMLGRTPAVLRSGAHDAAFYSGLYAALARGRPFRATFTNRRKDGSLFHAEQSIAPLCDGEGEVTHFVS
VSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDHFKSINDRHGHPAGDRVLAGV
GEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAERLRSSVAGLQFPAVGRVTMSLGLATLVAGETAAGLVMRADR
ALYRAKHGGRDRVETAAALD

Sequences:

>Translated_420_residues
MSSQREKLLEAAVAQSFNAVVITDARLDGGGPHIVYVNRAFCEMTGYAAEDLIGQSPRILQGPDTDPEVIDRLRTALRSG
SFFEGATVNYRRDGSAYDVEWNISPVRDDGGELSHFVSVQHNISDKMWMRRERDLLAQALNVASDPIIVTDRGGAIVFVN
QAFERLTGYPADEMLGRTPAVLRSGAHDAAFYSGLYAALARGRPFRATFTNRRKDGSLFHAEQSIAPLCDGEGEVTHFVS
VSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDHFKSINDRHGHPAGDRVLAGV
GEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAERLRSSVAGLQFPAVGRVTMSLGLATLVAGETAAGLVMRADR
ALYRAKHGGRDRVETAAALD
>Mature_419_residues
SSQREKLLEAAVAQSFNAVVITDARLDGGGPHIVYVNRAFCEMTGYAAEDLIGQSPRILQGPDTDPEVIDRLRTALRSGS
FFEGATVNYRRDGSAYDVEWNISPVRDDGGELSHFVSVQHNISDKMWMRRERDLLAQALNVASDPIIVTDRGGAIVFVNQ
AFERLTGYPADEMLGRTPAVLRSGAHDAAFYSGLYAALARGRPFRATFTNRRKDGSLFHAEQSIAPLCDGEGEVTHFVSV
SKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDHFKSINDRHGHPAGDRVLAGVG
EALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAERLRSSVAGLQFPAVGRVTMSLGLATLVAGETAAGLVMRADRA
LYRAKHGGRDRVETAAALD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=301, Percent_Identity=33.2225913621262, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1788381, Length=291, Percent_Identity=30.9278350515464, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=41.4201183431953, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693134, Length=218, Percent_Identity=33.0275229357798, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=36.5714285714286, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=36.9047619047619, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=242, Percent_Identity=29.7520661157025, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787541, Length=294, Percent_Identity=26.1904761904762, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=32.4468085106383, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=30.2631578947368, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.2784810126582, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=32.0754716981132, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081977, Length=228, Percent_Identity=28.5087719298246, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 45589; Mature: 45458

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQREKLLEAAVAQSFNAVVITDARLDGGGPHIVYVNRAFCEMTGYAAEDLIGQSPRIL
CCHHHHHHHHHHHHCCCCEEEEEECEECCCCCEEEEEEHHHHHHCCCHHHHHCCCCCCCC
QGPDTDPEVIDRLRTALRSGSFFEGATVNYRRDGSAYDVEWNISPVRDDGGELSHFVSVQ
CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHH
HNISDKMWMRRERDLLAQALNVASDPIIVTDRGGAIVFVNQAFERLTGYPADEMLGRTPA
HCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHCCCCHHHHHCCCHH
VLRSGAHDAAFYSGLYAALARGRPFRATFTNRRKDGSLFHAEQSIAPLCDGEGEVTHFVS
HHHCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCEEECHHCCCCCCCCCCCEEEEEH
VSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHEEEEEEECCCCCEEEEEECCHHH
FKSINDRHGHPAGDRVLAGVGEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAER
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
LRSSVAGLQFPAVGRVTMSLGLATLVAGETAAGLVMRADRALYRAKHGGRDRVETAAALD
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SSQREKLLEAAVAQSFNAVVITDARLDGGGPHIVYVNRAFCEMTGYAAEDLIGQSPRIL
CHHHHHHHHHHHHCCCCEEEEEECEECCCCCEEEEEEHHHHHHCCCHHHHHCCCCCCCC
QGPDTDPEVIDRLRTALRSGSFFEGATVNYRRDGSAYDVEWNISPVRDDGGELSHFVSVQ
CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHH
HNISDKMWMRRERDLLAQALNVASDPIIVTDRGGAIVFVNQAFERLTGYPADEMLGRTPA
HCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHHHHHCCCCHHHHHCCCHH
VLRSGAHDAAFYSGLYAALARGRPFRATFTNRRKDGSLFHAEQSIAPLCDGEGEVTHFVS
HHHCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCEEECHHCCCCCCCCCCCEEEEEH
VSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDIDH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHEEEEEEECCCCCEEEEEECCHHH
FKSINDRHGHPAGDRVLAGVGEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAER
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
LRSSVAGLQFPAVGRVTMSLGLATLVAGETAAGLVMRADRALYRAKHGGRDRVETAAALD
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]