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The map label for this gene is nusB

Identifier: 119896608

GI number: 119896608

Start: 342549

End: 343016

Strand: Reverse

Name: nusB

Synonym: azo0317

Alternate gene names: 119896608

Gene position: 343016-342549 (Counterclockwise)

Preceding gene: 119896609

Following gene: 119896590

Centisome position: 7.84

GC content: 66.24

Gene sequence:

>468_bases
ATGAGCAGCCGGATGGCGCGCCGGCGCGCGCGCGAACTCGCGCTGCAGGGCGTTTACCAGTGGCTGCTGTCGGGCAATTC
GCCCCAGGTGGTCGAAGCCCACGTGGAAGCGGAAGCGGCCGATTTCGACAAGGTGGATCGCGAACTCTTCGTGATGCTGC
TGCGCGGCACGCTGGATAACGTCGGCGCGCTGCAGGACGAGTTCTCGCCCTTCATCCATCGCCCTATCGAGGAGTTGTCG
CCGATCGAACGCGCGATCCTGCTGCTCGGCACCCACGAACTCAAGCACAACATCGAGACGCCCTACCGGGTCGTGATCAA
TGAGGCGATCGAACTCGCCAAGGCCTACGGCGGCACCGACGGCCACCGCTTCGTCAATGGCGTGCTCGACAAGCTCGCGG
CGCGCCTGCGCAGCATCGAGGTAGAAGCCGCGCGCGCCAAGAAGGACGCGGGCGACGGCCAGGCCTGA

Upstream 100 bases:

>100_bases
CCACCGAAGACGACGACCAGGCGCTGGCCCGCATGCAGGAAAAAGGCAGCGACTGCGCGCGCGCCGCGGTGGAGATGGCC
AACCTGCTGAAGGTCCTGCA

Downstream 100 bases:

>100_bases
AGCCGGTTCCGCGCTGCCATTCGGCGCCTGCCCAATAAAAAAGCCCGCTACACAGCGGGCTTTTTTCATTCAACCAGGCA
GTGCTCAGCCGCGCGGACCG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSSRMARRRARELALQGVYQWLLSGNSPQVVEAHVEAEAADFDKVDRELFVMLLRGTLDNVGALQDEFSPFIHRPIEELS
PIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDGHRFVNGVLDKLAARLRSIEVEAARAKKDAGDGQA

Sequences:

>Translated_155_residues
MSSRMARRRARELALQGVYQWLLSGNSPQVVEAHVEAEAADFDKVDRELFVMLLRGTLDNVGALQDEFSPFIHRPIEELS
PIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDGHRFVNGVLDKLAARLRSIEVEAARAKKDAGDGQA
>Mature_154_residues
SSRMARRRARELALQGVYQWLLSGNSPQVVEAHVEAEAADFDKVDRELFVMLLRGTLDNVGALQDEFSPFIHRPIEELSP
IERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDGHRFVNGVLDKLAARLRSIEVEAARAKKDAGDGQA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=126, Percent_Identity=44.4444444444444, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_AZOSB (A1K279)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_931821.1
- ProteinModelPortal:   A1K279
- SMR:   A1K279
- STRING:   A1K279
- GeneID:   4609716
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo0317
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   A1K279
- ProtClustDB:   PRK00202
- BioCyc:   ASP62928:AZO0317-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17258; Mature: 17127

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRMARRRARELALQGVYQWLLSGNSPQVVEAHVEAEAADFDKVDRELFVMLLRGTLDN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGALQDEFSPFIHRPIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
GHRFVNGVLDKLAARLRSIEVEAARAKKDAGDGQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSRMARRRARELALQGVYQWLLSGNSPQVVEAHVEAEAADFDKVDRELFVMLLRGTLDN
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGALQDEFSPFIHRPIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTD
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
GHRFVNGVLDKLAARLRSIEVEAARAKKDAGDGQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA