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The map label for this gene is ydiD [C]

Identifier: 119871351

GI number: 119871351

Start: 5561333

End: 5562967

Strand: Direct

Name: ydiD [C]

Synonym: Mkms_5325

Alternate gene names: 119871351

Gene position: 5561333-5562967 (Clockwise)

Preceding gene: 119871350

Following gene: 119871352

Centisome position: 96.93

GC content: 69.11

Gene sequence:

>1635_bases
GTGAGCACTTTTACCGAGACCATGTACAGCAATGCCCGCTCGAGCACCAAAGGGATGGTCACCGGAGAACCGGGCGACCC
CGTCCGCCACACCTGGCTCGAGGTCCACGAGCGTGCCTTGAGAATCGCCGGCGGGCTCGCCGCGGCAGGGGTCGGGCACG
GCGACGCGATCGCGGTGCTGGCCGGGGCGCCCGTCGAGATCGCGCCGACAGCCCAGGGCATCTGGATGCGCGGTGCGAGC
CTGACCATGCTGCACCAGCCGACCCCGCGCACCGATCTGCAGCGCTGGGCCGACGAGACCACCGCGGTCATCGACATGAT
CGACGCGAAGGCCGTGATCGTGTCCGAGCCGTTCATGCCCGCGGCTCCGCTGCTGTCCGGGCTCGGGATGCTGGTGCTGA
CGGTGGCCGAGCTCCTCGCCCACGAACCGGGTGAGATGGTCCCGACCGGTGACGACGACATCGCCCTCATGCAGTTGACG
TCCGGGTCCACGGGTTCACCGAAGGCCGTGCAGATATCGCATGCCAACGTGGTGGCCAACGCCGAGGCGATGATCGTCGG
CTGCGAGTTCGACATCGAGACCGACGTGATCGTGAGTTGGCTGCCGTGTTTCCACGACATGGGCATGACGGGGTACCTCA
CCGTGCCCATGTACTTCGGCGCGGAACTGGTCAAGGTCACGCCGATGGACTTTCTGCACGACACGCTGCTGTGGGCCAAG
CTCATCCACAAATACCGCGGCACCATGACCGCGGCGCCCAACTTCGCCTACACCCTGTTCGCCAAGCGGCTGCGCCGGCT
CGCCACCCCCGGCGAGTTCGACCTGTCGTCGCTGCGGTGGGCGCTGTCGGGCGCCGAGCAGGTCGACCCGCTCGACGTCG
AGGATCTCTGCGAGGCCGGTGTGCCGTTCGGGTTGAAGCCGGAGGCGATCATCCCGGCGTACGGCATGGCCGAGACGACG
GTCGCGGTGTCGTTCTCCGAATGCGGTCGCGGCATGGTCGTCGACGAGGTGGACGCCGACCTGCTGTCCGTGCTCCACCG
CGCCGTGCCTGCGAACAAGGGCCACACCCGGCGGCTCGTATCGCTGGGCCGGCCGCTGCCGGGGCTCGAGGTGCGGGTGC
TCGACGAGGACGGTGCGGTCCTGCCCGCCCGCGGGGTGGGGGTGATCGAGGTGCGGGGCCGGCCGGTGAGCCGCGGCTAC
ACCACGACCGCCGGATTCGTCCCGGCGCAGGACGAGTTGGGTTGGTACGACACCGGTGACCTCGGATACCTCACCGAGGC
AGGCGAGGTGGTGGTGTGCGGCCGGCTCAAGGACGTGATCATCATGGCCGGCCGCAACATCTATCCGACGGACATCGAGC
GGGCCGCGGCCCGGGTCGACGGTGTGCGGCCGGGTTGCGCAGTGGCCATCCGCCTCGACGGAGGCCACCCACGCGAGACA
TTCGCCGTGGCGGTGGAGAGCAAGCACTTCGAGGACGTCAAGCAGGTCCGGCGCATCCAGCGTCAGGTGGCCCACGAGGT
GGTGGCGGAGGTCGACGTGCGGCCCCGCAACGTGGTGGTGCTCGAGCCCGGCATGATCCCGAAGACACCGTCGGGCAAGC
TGCGCCGGGCCCACGCGCTATCGCTCATCGACTGA

Upstream 100 bases:

>100_bases
TTCGACATCCACTGCTCGGCGTCCTGCGAAGCCCGGTCCGAATCCCTCGCGATGCATGCGCCCAGCTCGATACCTCGTGC
GTCGGGGCCTAAGGAGTGCG

Downstream 100 bases:

>100_bases
TTCCTTCTCACCGACTGCGGGTACTTTCGGTCTGTCACCGATCGGCGGCACCGTCGAGGCGGGAGGGGTGGCCGATGGCC
GATTACGACGCCCAGGCGGG

Product: long-chain-fatty-acid--CoA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MSTFTETMYSNARSSTKGMVTGEPGDPVRHTWLEVHERALRIAGGLAAAGVGHGDAIAVLAGAPVEIAPTAQGIWMRGAS
LTMLHQPTPRTDLQRWADETTAVIDMIDAKAVIVSEPFMPAAPLLSGLGMLVLTVAELLAHEPGEMVPTGDDDIALMQLT
SGSTGSPKAVQISHANVVANAEAMIVGCEFDIETDVIVSWLPCFHDMGMTGYLTVPMYFGAELVKVTPMDFLHDTLLWAK
LIHKYRGTMTAAPNFAYTLFAKRLRRLATPGEFDLSSLRWALSGAEQVDPLDVEDLCEAGVPFGLKPEAIIPAYGMAETT
VAVSFSECGRGMVVDEVDADLLSVLHRAVPANKGHTRRLVSLGRPLPGLEVRVLDEDGAVLPARGVGVIEVRGRPVSRGY
TTTAGFVPAQDELGWYDTGDLGYLTEAGEVVVCGRLKDVIIMAGRNIYPTDIERAAARVDGVRPGCAVAIRLDGGHPRET
FAVAVESKHFEDVKQVRRIQRQVAHEVVAEVDVRPRNVVVLEPGMIPKTPSGKLRRAHALSLID

Sequences:

>Translated_544_residues
MSTFTETMYSNARSSTKGMVTGEPGDPVRHTWLEVHERALRIAGGLAAAGVGHGDAIAVLAGAPVEIAPTAQGIWMRGAS
LTMLHQPTPRTDLQRWADETTAVIDMIDAKAVIVSEPFMPAAPLLSGLGMLVLTVAELLAHEPGEMVPTGDDDIALMQLT
SGSTGSPKAVQISHANVVANAEAMIVGCEFDIETDVIVSWLPCFHDMGMTGYLTVPMYFGAELVKVTPMDFLHDTLLWAK
LIHKYRGTMTAAPNFAYTLFAKRLRRLATPGEFDLSSLRWALSGAEQVDPLDVEDLCEAGVPFGLKPEAIIPAYGMAETT
VAVSFSECGRGMVVDEVDADLLSVLHRAVPANKGHTRRLVSLGRPLPGLEVRVLDEDGAVLPARGVGVIEVRGRPVSRGY
TTTAGFVPAQDELGWYDTGDLGYLTEAGEVVVCGRLKDVIIMAGRNIYPTDIERAAARVDGVRPGCAVAIRLDGGHPRET
FAVAVESKHFEDVKQVRRIQRQVAHEVVAEVDVRPRNVVVLEPGMIPKTPSGKLRRAHALSLID
>Mature_543_residues
STFTETMYSNARSSTKGMVTGEPGDPVRHTWLEVHERALRIAGGLAAAGVGHGDAIAVLAGAPVEIAPTAQGIWMRGASL
TMLHQPTPRTDLQRWADETTAVIDMIDAKAVIVSEPFMPAAPLLSGLGMLVLTVAELLAHEPGEMVPTGDDDIALMQLTS
GSTGSPKAVQISHANVVANAEAMIVGCEFDIETDVIVSWLPCFHDMGMTGYLTVPMYFGAELVKVTPMDFLHDTLLWAKL
IHKYRGTMTAAPNFAYTLFAKRLRRLATPGEFDLSSLRWALSGAEQVDPLDVEDLCEAGVPFGLKPEAIIPAYGMAETTV
AVSFSECGRGMVVDEVDADLLSVLHRAVPANKGHTRRLVSLGRPLPGLEVRVLDEDGAVLPARGVGVIEVRGRPVSRGYT
TTAGFVPAQDELGWYDTGDLGYLTEAGEVVVCGRLKDVIIMAGRNIYPTDIERAAARVDGVRPGCAVAIRLDGGHPRETF
AVAVESKHFEDVKQVRRIQRQVAHEVVAEVDVRPRNVVVLEPGMIPKTPSGKLRRAHALSLID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Homo sapiens, GI55749758, Length=480, Percent_Identity=23.125, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI145693145, Length=396, Percent_Identity=26.7676767676768, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1789201, Length=390, Percent_Identity=27.9487179487179, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788107, Length=332, Percent_Identity=26.8072289156627, Blast_Score=89, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17560308, Length=395, Percent_Identity=25.3164556962025, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17558820, Length=404, Percent_Identity=25.2475247524752, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17531443, Length=410, Percent_Identity=25.609756097561, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI20130357, Length=520, Percent_Identity=22.6923076923077, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21356947, Length=476, Percent_Identity=24.7899159663866, Blast_Score=97, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24581924, Length=308, Percent_Identity=25.974025974026, Blast_Score=86, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24648260, Length=519, Percent_Identity=24.4701348747592, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24653035, Length=491, Percent_Identity=23.4215885947047, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI161076582, Length=568, Percent_Identity=22.887323943662, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648253, Length=460, Percent_Identity=19.3478260869565, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: NA

Molecular weight: Translated: 58484; Mature: 58353

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFTETMYSNARSSTKGMVTGEPGDPVRHTWLEVHERALRIAGGLAAAGVGHGDAIAVL
CCCHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEE
AGAPVEIAPTAQGIWMRGASLTMLHQPTPRTDLQRWADETTAVIDMIDAKAVIVSEPFMP
ECCCEEECCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
AAPLLSGLGMLVLTVAELLAHEPGEMVPTGDDDIALMQLTSGSTGSPKAVQISHANVVAN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCEEEEC
AEAMIVGCEFDIETDVIVSWLPCFHDMGMTGYLTVPMYFGAELVKVTPMDFLHDTLLWAK
CCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEHHCCCEEEEECCHHHHHHHHHHHH
LIHKYRGTMTAAPNFAYTLFAKRLRRLATPGEFDLSSLRWALSGAEQVDPLDVEDLCEAG
HHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCC
VPFGLKPEAIIPAYGMAETTVAVSFSECGRGMVVDEVDADLLSVLHRAVPANKGHTRRLV
CCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCEEECCCHHHHHHHHHHCCCCCCCHHHHH
SLGRPLPGLEVRVLDEDGAVLPARGVGVIEVRGRPVSRGYTTTAGFVPAQDELGWYDTGD
HHCCCCCCCEEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCC
LGYLTEAGEVVVCGRLKDVIIMAGRNIYPTDIERAAARVDGVRPGCAVAIRLDGGHPRET
CCEEECCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCE
FAVAVESKHFEDVKQVRRIQRQVAHEVVAEVDVRPRNVVVLEPGMIPKTPSGKLRRAHAL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
SLID
CCCC
>Mature Secondary Structure 
STFTETMYSNARSSTKGMVTGEPGDPVRHTWLEVHERALRIAGGLAAAGVGHGDAIAVL
CCHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEE
AGAPVEIAPTAQGIWMRGASLTMLHQPTPRTDLQRWADETTAVIDMIDAKAVIVSEPFMP
ECCCEEECCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
AAPLLSGLGMLVLTVAELLAHEPGEMVPTGDDDIALMQLTSGSTGSPKAVQISHANVVAN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCEEEEC
AEAMIVGCEFDIETDVIVSWLPCFHDMGMTGYLTVPMYFGAELVKVTPMDFLHDTLLWAK
CCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEHHCCCEEEEECCHHHHHHHHHHHH
LIHKYRGTMTAAPNFAYTLFAKRLRRLATPGEFDLSSLRWALSGAEQVDPLDVEDLCEAG
HHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCC
VPFGLKPEAIIPAYGMAETTVAVSFSECGRGMVVDEVDADLLSVLHRAVPANKGHTRRLV
CCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCEEECCCHHHHHHHHHHCCCCCCCHHHHH
SLGRPLPGLEVRVLDEDGAVLPARGVGVIEVRGRPVSRGYTTTAGFVPAQDELGWYDTGD
HHCCCCCCCEEEEECCCCCEEECCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCC
LGYLTEAGEVVVCGRLKDVIIMAGRNIYPTDIERAAARVDGVRPGCAVAIRLDGGHPRET
CCEEECCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCE
FAVAVESKHFEDVKQVRRIQRQVAHEVVAEVDVRPRNVVVLEPGMIPKTPSGKLRRAHAL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
SLID
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA