Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 119870656

GI number: 119870656

Start: 4850971

End: 4851948

Strand: Direct

Name: ybjT [H]

Synonym: Mkms_4627

Alternate gene names: 119870656

Gene position: 4850971-4851948 (Clockwise)

Preceding gene: 119870655

Following gene: 119870659

Centisome position: 84.55

GC content: 67.59

Gene sequence:

>978_bases
GTGGTTGACAACATCCGCTGCTTGGTGACGGGCGCGACGGGTTACATCGGCGGTCGGCTGGTGCCCGCACTGCTCGACCG
CGGCCTGCAGGTCCGCGCGATGGCACGCACCCCGGGCAAGCTGGACGACGCGCCGTGGCGTGCGCAGGTCGAGGTGGCGA
AGGGCGATCTGATGGATCGCGAATCGTTGGCGGCGGCGTTCGAGGGCATGGATGTCGTCTACTACCTCGTGCACTCGATG
GGCACGTCGAAGAACTTCGTCGCCGAGGAAGCCGAGTCGGCACACAACGTGGTGGCCGCGGCCAAGCAGGCCGGGGTCCG
CCGGGTGGTGTACCTGAGTGGTCTGCATCCCGAAGGGGTCGAGTTGTCGCGGCATCTGGCCTCCCGCACCGAGGTTGGCG
AGATCCTCATCGACTCCGGTATCGAAACGATGGTGCTGCAGGCCGGGATCGTCGTCGGATCGGGGTCGGCGTCCTTCGAG
ATGATCCGCCACCTGACCGACCGACTGCCGATCATGACCGCACCGAAGTGGGTGCACAACAAGATCCAGCCGATCTCCAT
CGACGATGCCCTGTACTACCTGGTCGAGGCGGCCACCGCGGTGGTGCCGTCGTCGCGGACCTGGGACATCGGCGGTCCGG
ACGTCCTGGAGTACGGCGACGCGATGCAGGTCTACGCCGACCTCGCCGGGCTGCGTCCCCGCCGGTTCGTGGTGTTGCCG
TGGCTGACGCCCACACTGGCCAGTCACTGGGTGGGTCTGGTCACGCCGATCTCATCGGGGCTGGCGCGGCCGCTGGTGGA
GTCGCTGGAATGCGATGCCGTCACGCATGAGAACGACATCGACGCCGTGATTCCGCATCCGCCCGGCGGACTGACCGGTT
ACCGGAAGTCGGTCGCCGCGGCGCTTCGGGAGAACGGTACGGCCGCGACCGGCGGCAGGCGTCACCTGCTGCGGATCAAT
CCCGCGGTCGCTCAATAG

Upstream 100 bases:

>100_bases
CACCCGACCCCGGCTGTGGGTTTGCCTGAGGCGTTTCGCGGTCATCCGTGCTGATACCGGCTCCGAATCACTGTGAGACG
GCGACGGAACGGAGATTGGT

Downstream 100 bases:

>100_bases
GAGGCGTCAAGGCCTACACGCGCCGGAGGCGTCAAGGCCTACACGACGCCGGAGGCGTCAAGGCCTACGAAGCGCCGAGG
CGTTGTCGTTGTCGACCTTC

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVDNIRCLVTGATGYIGGRLVPALLDRGLQVRAMARTPGKLDDAPWRAQVEVAKGDLMDRESLAAAFEGMDVVYYLVHSM
GTSKNFVAEEAESAHNVVAAAKQAGVRRVVYLSGLHPEGVELSRHLASRTEVGEILIDSGIETMVLQAGIVVGSGSASFE
MIRHLTDRLPIMTAPKWVHNKIQPISIDDALYYLVEAATAVVPSSRTWDIGGPDVLEYGDAMQVYADLAGLRPRRFVVLP
WLTPTLASHWVGLVTPISSGLARPLVESLECDAVTHENDIDAVIPHPPGGLTGYRKSVAAALRENGTAATGGRRHLLRIN
PAVAQ

Sequences:

>Translated_325_residues
MVDNIRCLVTGATGYIGGRLVPALLDRGLQVRAMARTPGKLDDAPWRAQVEVAKGDLMDRESLAAAFEGMDVVYYLVHSM
GTSKNFVAEEAESAHNVVAAAKQAGVRRVVYLSGLHPEGVELSRHLASRTEVGEILIDSGIETMVLQAGIVVGSGSASFE
MIRHLTDRLPIMTAPKWVHNKIQPISIDDALYYLVEAATAVVPSSRTWDIGGPDVLEYGDAMQVYADLAGLRPRRFVVLP
WLTPTLASHWVGLVTPISSGLARPLVESLECDAVTHENDIDAVIPHPPGGLTGYRKSVAAALRENGTAATGGRRHLLRIN
PAVAQ
>Mature_325_residues
MVDNIRCLVTGATGYIGGRLVPALLDRGLQVRAMARTPGKLDDAPWRAQVEVAKGDLMDRESLAAAFEGMDVVYYLVHSM
GTSKNFVAEEAESAHNVVAAAKQAGVRRVVYLSGLHPEGVELSRHLASRTEVGEILIDSGIETMVLQAGIVVGSGSASFE
MIRHLTDRLPIMTAPKWVHNKIQPISIDDALYYLVEAATAVVPSSRTWDIGGPDVLEYGDAMQVYADLAGLRPRRFVVLP
WLTPTLASHWVGLVTPISSGLARPLVESLECDAVTHENDIDAVIPHPPGGLTGYRKSVAAALRENGTAATGGRRHLLRIN
PAVAQ

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081793, Length=300, Percent_Identity=33.3333333333333, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34908; Mature: 34908

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNIRCLVTGATGYIGGRLVPALLDRGLQVRAMARTPGKLDDAPWRAQVEVAKGDLMDR
CCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
ESLAAAFEGMDVVYYLVHSMGTSKNFVAEEAESAHNVVAAAKQAGVRRVVYLSGLHPEGV
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
ELSRHLASRTEVGEILIDSGIETMVLQAGIVVGSGSASFEMIRHLTDRLPIMTAPKWVHN
HHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHC
KIQPISIDDALYYLVEAATAVVPSSRTWDIGGPDVLEYGDAMQVYADLAGLRPRRFVVLP
CCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHCCHHHHHHHHHCCCCCEEEEEC
WLTPTLASHWVGLVTPISSGLARPLVESLECDAVTHENDIDAVIPHPPGGLTGYRKSVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHH
ALRENGTAATGGRRHLLRINPAVAQ
HHHCCCCCCCCCCEEEEEECHHHCC
>Mature Secondary Structure
MVDNIRCLVTGATGYIGGRLVPALLDRGLQVRAMARTPGKLDDAPWRAQVEVAKGDLMDR
CCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCH
ESLAAAFEGMDVVYYLVHSMGTSKNFVAEEAESAHNVVAAAKQAGVRRVVYLSGLHPEGV
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
ELSRHLASRTEVGEILIDSGIETMVLQAGIVVGSGSASFEMIRHLTDRLPIMTAPKWVHN
HHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHC
KIQPISIDDALYYLVEAATAVVPSSRTWDIGGPDVLEYGDAMQVYADLAGLRPRRFVVLP
CCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHCCHHHHHHHHHCCCCCEEEEEC
WLTPTLASHWVGLVTPISSGLARPLVESLECDAVTHENDIDAVIPHPPGGLTGYRKSVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHH
ALRENGTAATGGRRHLLRINPAVAQ
HHHCCCCCCCCCCEEEEEECHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]