Click here to switch to the map view.

The map label for this gene is ycbG [H]

Identifier: 119870187

GI number: 119870187

Start: 4385427

End: 4386212

Strand: Direct

Name: ycbG [H]

Synonym: Mkms_4157

Alternate gene names: 119870187

Gene position: 4385427-4386212 (Clockwise)

Preceding gene: 119870183

Following gene: 119870191

Centisome position: 76.44

GC content: 69.97

Gene sequence:

>786_bases
GTGGCTCGAACGACACCGCTGGCCCCCATGATCGGGGCGAGCCCTTCGACGACCGCTGTCCGCTCCCCCAAGACCGCGGA
ACTGGTCGCCGGCACCCTGCGCCGCATGGTGGTCGACGGCAAGCTCAAAGAGGGCGACTTCCTGCCCAACGAAGCCGAGC
TGATGGCCCACTTCGGCGTCAGCAGGCCGACACTGCGCGAGGCCGTGCGGGTCCTCGAATCCGAGCGCCTCGTCGAGGTG
CGCCGCGGTTCGCGCACCGGCGCCCGCGTGCGGGTGCCCGGTCCGGAGATCGTCGCCCGCCCGGCGGGTCTGCTGCTGGA
ACTGTCCGGCGCGACGATCGCCGACGTGATGACCGCCCGCTCCGGCATCGAGCCGATGGCGGTGCGGCTGCTCACCGAAT
CCGGCGACACCGCCGCCTTCGACGAACTCGAGCAGACCCTCGACGAACAGGTCGCGCACAGCTGGCAGTCGGGCCGGCTC
GCCGAGACGACCGGCGACTTCCACCGCCGCATGGTCGAACTCTCGGGCAACGCCACGCTGACCATCATGGCGGGCATGCT
GCACGAGATCACGGTGCGCCACACCGCGTTCGCGATGAAGGAGAGCAATCCGCCGTCGAAGGCCGACTACGAGAAGCTGA
TGCGCTCCTACCGCCGGCTGCTGCAGTTGATGCGGTCCGGGGACGGCGCCGCGGCCGAGGCGCACTGGCGTAAACACCTC
GACACCGCACGCGCACTGCTGCTTCAGGGCCTGGAGGATGTCAAGGTCCGCGACGTCATGGGCTAG

Upstream 100 bases:

>100_bases
TGGTTGGTGGGGTCAGCCTCCGGCTGTGGACCCCCCTCAGATGGTTTACTGAGTTGTACAGCTGGCCGTCGGCCGGCGTG
GCGCGGACCCGGGAGATCAG

Downstream 100 bases:

>100_bases
CGGCTCGCCGAAACTGCTGGGAGATCACGTCATTGCGCCGATTCGCGATCTGACCGCAGTCTCGGCGCATCGTCGCCGTC
CCGCCGCCACGTCACGTGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MARTTPLAPMIGASPSTTAVRSPKTAELVAGTLRRMVVDGKLKEGDFLPNEAELMAHFGVSRPTLREAVRVLESERLVEV
RRGSRTGARVRVPGPEIVARPAGLLLELSGATIADVMTARSGIEPMAVRLLTESGDTAAFDELEQTLDEQVAHSWQSGRL
AETTGDFHRRMVELSGNATLTIMAGMLHEITVRHTAFAMKESNPPSKADYEKLMRSYRRLLQLMRSGDGAAAEAHWRKHL
DTARALLLQGLEDVKVRDVMG

Sequences:

>Translated_261_residues
MARTTPLAPMIGASPSTTAVRSPKTAELVAGTLRRMVVDGKLKEGDFLPNEAELMAHFGVSRPTLREAVRVLESERLVEV
RRGSRTGARVRVPGPEIVARPAGLLLELSGATIADVMTARSGIEPMAVRLLTESGDTAAFDELEQTLDEQVAHSWQSGRL
AETTGDFHRRMVELSGNATLTIMAGMLHEITVRHTAFAMKESNPPSKADYEKLMRSYRRLLQLMRSGDGAAAEAHWRKHL
DTARALLLQGLEDVKVRDVMG
>Mature_260_residues
ARTTPLAPMIGASPSTTAVRSPKTAELVAGTLRRMVVDGKLKEGDFLPNEAELMAHFGVSRPTLREAVRVLESERLVEVR
RGSRTGARVRVPGPEIVARPAGLLLELSGATIADVMTARSGIEPMAVRLLTESGDTAAFDELEQTLDEQVAHSWQSGRLA
ETTGDFHRRMVELSGNATLTIMAGMLHEITVRHTAFAMKESNPPSKADYEKLMRSYRRLLQLMRSGDGAAAEAHWRKHLD
TARALLLQGLEDVKVRDVMG

Specific function: Sialic acid (NANA) and N-acetylmannosamine utilization [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789621, Length=180, Percent_Identity=30.5555555555556, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28547; Mature: 28416

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50949 HTH_GNTR ; PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTTPLAPMIGASPSTTAVRSPKTAELVAGTLRRMVVDGKLKEGDFLPNEAELMAHFGV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
SRPTLREAVRVLESERLVEVRRGSRTGARVRVPGPEIVARPAGLLLELSGATIADVMTAR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCEEEEECCCHHHHHHHHH
SGIEPMAVRLLTESGDTAAFDELEQTLDEQVAHSWQSGRLAETTGDFHRRMVELSGNATL
CCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE
TIMAGMLHEITVRHTAFAMKESNPPSKADYEKLMRSYRRLLQLMRSGDGAAAEAHWRKHL
EHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DTARALLLQGLEDVKVRDVMG
HHHHHHHHHCHHHHHHHHCCC
>Mature Secondary Structure 
ARTTPLAPMIGASPSTTAVRSPKTAELVAGTLRRMVVDGKLKEGDFLPNEAELMAHFGV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
SRPTLREAVRVLESERLVEVRRGSRTGARVRVPGPEIVARPAGLLLELSGATIADVMTAR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCEEEEECCCHHHHHHHHH
SGIEPMAVRLLTESGDTAAFDELEQTLDEQVAHSWQSGRLAETTGDFHRRMVELSGNATL
CCCCHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE
TIMAGMLHEITVRHTAFAMKESNPPSKADYEKLMRSYRRLLQLMRSGDGAAAEAHWRKHL
EHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DTARALLLQGLEDVKVRDVMG
HHHHHHHHHCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]