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The map label for this gene is ycdM [C]

Identifier: 119868953

GI number: 119868953

Start: 3060991

End: 3062046

Strand: Direct

Name: ycdM [C]

Synonym: Mkms_2921

Alternate gene names: 119868953

Gene position: 3060991-3062046 (Clockwise)

Preceding gene: 119868951

Following gene: 119868954

Centisome position: 53.35

GC content: 70.55

Gene sequence:

>1056_bases
GTGTCTCGTCGACCTTCGCCCACCCACCGACGCCGATCTGTACTATCGCGCCATGGCGTTGGCCGAGCGGGCGACGTTCG
CGGTGCCGAAGGTGCTGCCCGCGACCGTATCAGCGCACGACACGTACCGAGAGCGGTTCAACCGGGAAGCCCGCCGGCGC
AGCAACGGACTGCCGCTCCCGTGAAATACGCCGTCGTCGCACCGGTCCACGCCGGGGTCACCGCCGATCCGGCCTGGATG
GCGGCGTTCGCGCGGCACCTCGAGGCGTGCGGATTCGAGTCGATCGTCGCCGTCGAGCACACGGTGCTGATGACGCAGTA
CACCAGCGTCTACCCCTACGACCCGTCCGGGCGGGTCGAATTGGCCGCCGACACCCCGGTACCCGATCCGTTGGATCTGC
TGACTTTCCTCGCCGCGCACACCGAGCGGCTGGGGTTGGCGACCGGTGTGCTGGTACTGCCCAACCACCATCCGGTGGTG
CTGGCCAAGCGGGTGGCGACCGTCGACGCGCTGTCGCGAGGCCGGGTACGGCTCGCCGTCGGGACCGGATGGCTCGCCGA
GGAGATCAACGCGTGCGGTGCCGACTTCACCACCCGCGGTCGCCGCGCCGACGAGCAGATCCAGGTGTTGCGGACGCTGT
GGGCGGACTCCCCGCTCGGGGCGAGTTTCCACGGCGAGTTCGTCGAGTTCGACCACGCGATGTGCTTTCCGAAGCCGGCC
GCGCGTGTGCCGATCCACATCGGCGGACACAGCCGGGCGGCGGCGCGGCGCGCGGGCCGGCTGGGTGACGGTTTCCAGCC
CCTGGGCGTCGCAGGCGCCGACCTGAGCGACCTCGTCGAGGTGATGCGTTCCGCCGCAGTGGAATCCGGGCGCGACCCAG
ATGCCGTCGAACTGTCGCTGGGACACGCAGTTGCCAAGATCGACGCGGCCCGTGCGGAGCGGCTCGCGGAGGTGGGCGCC
GACCGCTTGGTGCTGGCGATGCCGCCGGTCACGACGCTCGACGAGGCGACCGACGTGGTGTCGGCGTGCGCCCAGCGGTT
GGGACTGACTTCATGA

Upstream 100 bases:

>100_bases
GCCGTGGCCGCCTGCAGATGCGCCAGGAAACGGTTGGTGAAAGTGCCGGGTAGCTGTTGCCCGCCCACGTGAAGCGTTGC
CACGGATTCGCCCTTCGCTC

Downstream 100 bases:

>100_bases
CACTGGCCGTGGCCGACCGGCTGGCTCTGGCCGACCTGGTGCACCTCTATGCCGCCGCCGTCGACGACCGCCGGTTCGAC
GACGTGGCCCAGTTGTTCAC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSRRPSPTHRRRSVLSRHGVGRAGDVRGAEGAARDRISARHVPRAVQPGSPPAQQRTAAPVKYAVVAPVHAGVTADPAWM
AAFARHLEACGFESIVAVEHTVLMTQYTSVYPYDPSGRVELAADTPVPDPLDLLTFLAAHTERLGLATGVLVLPNHHPVV
LAKRVATVDALSRGRVRLAVGTGWLAEEINACGADFTTRGRRADEQIQVLRTLWADSPLGASFHGEFVEFDHAMCFPKPA
ARVPIHIGGHSRAAARRAGRLGDGFQPLGVAGADLSDLVEVMRSAAVESGRDPDAVELSLGHAVAKIDAARAERLAEVGA
DRLVLAMPPVTTLDEATDVVSACAQRLGLTS

Sequences:

>Translated_351_residues
MSRRPSPTHRRRSVLSRHGVGRAGDVRGAEGAARDRISARHVPRAVQPGSPPAQQRTAAPVKYAVVAPVHAGVTADPAWM
AAFARHLEACGFESIVAVEHTVLMTQYTSVYPYDPSGRVELAADTPVPDPLDLLTFLAAHTERLGLATGVLVLPNHHPVV
LAKRVATVDALSRGRVRLAVGTGWLAEEINACGADFTTRGRRADEQIQVLRTLWADSPLGASFHGEFVEFDHAMCFPKPA
ARVPIHIGGHSRAAARRAGRLGDGFQPLGVAGADLSDLVEVMRSAAVESGRDPDAVELSLGHAVAKIDAARAERLAEVGA
DRLVLAMPPVTTLDEATDVVSACAQRLGLTS
>Mature_350_residues
SRRPSPTHRRRSVLSRHGVGRAGDVRGAEGAARDRISARHVPRAVQPGSPPAQQRTAAPVKYAVVAPVHAGVTADPAWMA
AFARHLEACGFESIVAVEHTVLMTQYTSVYPYDPSGRVELAADTPVPDPLDLLTFLAAHTERLGLATGVLVLPNHHPVVL
AKRVATVDALSRGRVRLAVGTGWLAEEINACGADFTTRGRRADEQIQVLRTLWADSPLGASFHGEFVEFDHAMCFPKPAA
RVPIHIGGHSRAAARRAGRLGDGFQPLGVAGADLSDLVEVMRSAAVESGRDPDAVELSLGHAVAKIDAARAERLAEVGAD
RLVLAMPPVTTLDEATDVVSACAQRLGLTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=210, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 37198; Mature: 37067

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRPSPTHRRRSVLSRHGVGRAGDVRGAEGAARDRISARHVPRAVQPGSPPAQQRTAAP
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
VKYAVVAPVHAGVTADPAWMAAFARHLEACGFESIVAVEHTVLMTQYTSVYPYDPSGRVE
EEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHEEHHCEECCCCCCCCEE
LAADTPVPDPLDLLTFLAAHTERLGLATGVLVLPNHHPVVLAKRVATVDALSRGRVRLAV
EEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHCCCCEEEEE
GTGWLAEEINACGADFTTRGRRADEQIQVLRTLWADSPLGASFHGEFVEFDHAMCFPKPA
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCC
ARVPIHIGGHSRAAARRAGRLGDGFQPLGVAGADLSDLVEVMRSAAVESGRDPDAVELSL
CCCCEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEH
GHAVAKIDAARAERLAEVGADRLVLAMPPVTTLDEATDVVSACAQRLGLTS
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRRPSPTHRRRSVLSRHGVGRAGDVRGAEGAARDRISARHVPRAVQPGSPPAQQRTAAP
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
VKYAVVAPVHAGVTADPAWMAAFARHLEACGFESIVAVEHTVLMTQYTSVYPYDPSGRVE
EEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHEEHHCEECCCCCCCCEE
LAADTPVPDPLDLLTFLAAHTERLGLATGVLVLPNHHPVVLAKRVATVDALSRGRVRLAV
EEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHCCCCEEEEE
GTGWLAEEINACGADFTTRGRRADEQIQVLRTLWADSPLGASFHGEFVEFDHAMCFPKPA
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCC
ARVPIHIGGHSRAAARRAGRLGDGFQPLGVAGADLSDLVEVMRSAAVESGRDPDAVELSL
CCCCEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEH
GHAVAKIDAARAERLAEVGADRLVLAMPPVTTLDEATDVVSACAQRLGLTS
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]