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The map label for this gene is sorC [H]

Identifier: 119868633

GI number: 119868633

Start: 2731869

End: 2732897

Strand: Reverse

Name: sorC [H]

Synonym: Mkms_2598

Alternate gene names: 119868633

Gene position: 2732897-2731869 (Counterclockwise)

Preceding gene: 119868642

Following gene: 119868630

Centisome position: 47.63

GC content: 71.23

Gene sequence:

>1029_bases
GTGCCCCGGCCCGCACAGCCCGCGTCCGCGCCCGGTGTCGACAGTCCGATCCCGGACTCCGACGCCGGCCATTTCCCCGC
TTCGCTGCTCTACGCCGCGGCGAAGCTCTACTACACCGAGGACGCCACCCAGGCGGAGGTGGCCTCCCAGCTCGGTACCA
GCCGGGCGACGGTGAGCCGCCTGCTCGCCGAGGCCAAACGCCGCGGCATCGTGCGCATCGAGGTCGTGCCGCCCGCGGAG
GTCGCCTCCGGTGATCTCGCAGACCGGGTGGCCCGGGCGCTGTCGCTGACGACCGTCTTCCTCAGCCATCCCCTGCCTCA
TCCCGGCCCGGGGCGCGGCATCGTCGACGTGATGGGGGCCGCGCTGGCGCCGGCGGTCGGACGGGCGTTGTCGGGTGCCG
GACTGCTACCCGGGGACGTGTTGCTGGTGTCGAGCGGGCGCACGGTCTACGAGGTCTCCCAGTACGACCTCGTACCGCTG
CCGGGCGTGCTGGTGGCCCCGACCGTCGGCGGCAACGACCAGCCCGAGGAGTGGTACCAGACCAACGAGATCACCCGCCG
GGTCGCCAATCGGGTCAACGGCAGGCCGAACTACTTGTTCGCCCCCGCCCTGCCCGGGCCGGAACTGTATCCGTCGCTGC
TCAACGATCCGAGTATCCAACGCGTGCTGCACCTGTGGCCGCACGCCCGGTGCGCGCTGATGGGTGTCGGGGCGCCGCCG
CTCATGCGTTCGGACATCCCCCAGTTCGTCCCGACCCGGTCGAACTCACTGCGTGCGGCCGTCGGCGACGTGTGCTCGCG
CTTCTACGACCGCGACGGCAACGAGGTCGACTTCGAGGGCAGCGACCGTCTGATCGCCGTCGAACTCGAGGTGTTACGCC
ACGTCCCCGTGACGATCGCCGTCGCCGTCGGCAGCGACAAGGTGTCCTCGATCGTCGCCGGCGCGCGCGGCGGTTACTTC
AACCAGTTGGTCACCGACCCGGGCACCGCGGCGGCCATCCTCGAGGCGGTCGACGGTAGGACCGACTGA

Upstream 100 bases:

>100_bases
TGGTTGCGCTCACACTAACCAATGCGGTGCACATCTGTCCAGAACATCTGTTCAGAGAGAATCTGTTCAGCGTCAGGCGT
TCAATGTCATACTTCTAGGC

Downstream 100 bases:

>100_bases
GCGTCAGCGCGTCCTCACCGGCAGTTTCGCCCACCCGCGCACGCTGGACGTCCGCGCCCTGGTGGCGTTGGCGTAGTCGA
CGTCCCAGTCCGTCCACCGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPRPAQPASAPGVDSPIPDSDAGHFPASLLYAAAKLYYTEDATQAEVASQLGTSRATVSRLLAEAKRRGIVRIEVVPPAE
VASGDLADRVARALSLTTVFLSHPLPHPGPGRGIVDVMGAALAPAVGRALSGAGLLPGDVLLVSSGRTVYEVSQYDLVPL
PGVLVAPTVGGNDQPEEWYQTNEITRRVANRVNGRPNYLFAPALPGPELYPSLLNDPSIQRVLHLWPHARCALMGVGAPP
LMRSDIPQFVPTRSNSLRAAVGDVCSRFYDRDGNEVDFEGSDRLIAVELEVLRHVPVTIAVAVGSDKVSSIVAGARGGYF
NQLVTDPGTAAAILEAVDGRTD

Sequences:

>Translated_342_residues
MPRPAQPASAPGVDSPIPDSDAGHFPASLLYAAAKLYYTEDATQAEVASQLGTSRATVSRLLAEAKRRGIVRIEVVPPAE
VASGDLADRVARALSLTTVFLSHPLPHPGPGRGIVDVMGAALAPAVGRALSGAGLLPGDVLLVSSGRTVYEVSQYDLVPL
PGVLVAPTVGGNDQPEEWYQTNEITRRVANRVNGRPNYLFAPALPGPELYPSLLNDPSIQRVLHLWPHARCALMGVGAPP
LMRSDIPQFVPTRSNSLRAAVGDVCSRFYDRDGNEVDFEGSDRLIAVELEVLRHVPVTIAVAVGSDKVSSIVAGARGGYF
NQLVTDPGTAAAILEAVDGRTD
>Mature_341_residues
PRPAQPASAPGVDSPIPDSDAGHFPASLLYAAAKLYYTEDATQAEVASQLGTSRATVSRLLAEAKRRGIVRIEVVPPAEV
ASGDLADRVARALSLTTVFLSHPLPHPGPGRGIVDVMGAALAPAVGRALSGAGLLPGDVLLVSSGRTVYEVSQYDLVPLP
GVLVAPTVGGNDQPEEWYQTNEITRRVANRVNGRPNYLFAPALPGPELYPSLLNDPSIQRVLHLWPHARCALMGVGAPPL
MRSDIPQFVPTRSNSLRAAVGDVCSRFYDRDGNEVDFEGSDRLIAVELEVLRHVPVTIAVAVGSDKVSSIVAGARGGYFN
QLVTDPGTAAAILEAVDGRTD

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=310, Percent_Identity=29.0322580645161, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787791, Length=340, Percent_Identity=29.1176470588235, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36040; Mature: 35909

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPAQPASAPGVDSPIPDSDAGHFPASLLYAAAKLYYTEDATQAEVASQLGTSRATVSR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH
LLAEAKRRGIVRIEVVPPAEVASGDLADRVARALSLTTVFLSHPLPHPGPGRGIVDVMGA
HHHHHHHCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
ALAPAVGRALSGAGLLPGDVLLVSSGRTVYEVSQYDLVPLPGVLVAPTVGGNDQPEEWYQ
HHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHH
TNEITRRVANRVNGRPNYLFAPALPGPELYPSLLNDPSIQRVLHLWPHARCALMGVGAPP
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCC
LMRSDIPQFVPTRSNSLRAAVGDVCSRFYDRDGNEVDFEGSDRLIAVELEVLRHVPVTIA
HHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEEHHHHHCCCEEEE
VAVGSDKVSSIVAGARGGYFNQLVTDPGTAAAILEAVDGRTD
EEECCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PRPAQPASAPGVDSPIPDSDAGHFPASLLYAAAKLYYTEDATQAEVASQLGTSRATVSR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH
LLAEAKRRGIVRIEVVPPAEVASGDLADRVARALSLTTVFLSHPLPHPGPGRGIVDVMGA
HHHHHHHCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
ALAPAVGRALSGAGLLPGDVLLVSSGRTVYEVSQYDLVPLPGVLVAPTVGGNDQPEEWYQ
HHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHH
TNEITRRVANRVNGRPNYLFAPALPGPELYPSLLNDPSIQRVLHLWPHARCALMGVGAPP
HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCCC
LMRSDIPQFVPTRSNSLRAAVGDVCSRFYDRDGNEVDFEGSDRLIAVELEVLRHVPVTIA
HHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEEHHHHHCCCEEEE
VAVGSDKVSSIVAGARGGYFNQLVTDPGTAAAILEAVDGRTD
EEECCHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]