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The map label for this gene is ydiS [C]

Identifier: 119867911

GI number: 119867911

Start: 1986910

End: 1988091

Strand: Reverse

Name: ydiS [C]

Synonym: Mkms_1873

Alternate gene names: 119867911

Gene position: 1988091-1986910 (Counterclockwise)

Preceding gene: 119867916

Following gene: 119867907

Centisome position: 34.65

GC content: 66.58

Gene sequence:

>1182_bases
ATGACACAGCGATACGACCTGGTCATCGCAGGTGGCGGCCCTTCGGGAGCGGCCGCGGCGTGGCAGGCCGCGCAGACCGG
CGCCAAGGTGGTCGTCCTGGACAAGGCCGTGTTCCCGCGCGACAAGCCGTGCGGTGACGGCCTGACCGCCCGGGCGGTCA
GCTACCTGCAGAAGATGGGCCTCGCCGACGAGGTCGCCACCTTCCACCGGGTCAACCGCGTGACGGTCTTCAGCCCCAGC
CAGTGGGAGCTGTCCTTCCCCAAGCGCCCCGGGATGCCCGATCACGGCCACACCGTCAGCCGCACCCACCTGGACACCGT
GCTGCTCAAGCACGCCGAATCCGCGGGCGCGGAGGTGCGTCAGGGCGCGGAGGTCACCGGCCCCGAACTCGACGCCAACG
GCCGGGTGATCGGCGTGACGCTCAAGGGGGGCGAGAAGGTTTACGGCGATGCGGTGATCGCCGCCGACGGTGCCTACTCC
CCCATCAAGCGAGCACTGAAGATCGATTCGCAGTACAACGGCTACCAGGCAATCGCGATCCGCTCGGAGATGCACGCCAA
CCGGCCCGACTCCGACAGCCTCGACATCTATCTGAAGCTGCAGTTCCAGGGCGATCAGCTGCCCGGTTACGGCTGGGTGT
TCCCGATGGGCGACGGAATCTTCAACATTGGCCTCGGCTACGTCAACAGCTACAAGAACTGGCAGTCGATCAACGCCACG
CAGTTCCTCGGCGAGTTCCTGCGGACCCTGCCGCGGGACTGGGATCTCCCGCCGATCGAGGAACTGAAGAAGAACAAGAG
CGTGCGGGCGTGGCGATTGCCGATGGGCTTCACCGCATGGCCGCCGTGGCGTCCGGGTGTGCTGTTCACCGGCGACTCTC
TCGGTGCGGGTAAGCCGGCGTCGGGCGCGGGGATCTCCAAGGCGCTCGAGTCCGGGCTGGCCGCAGGCGAATGCGCGATC
GCGGCGCTGACCAACGGCGGGCCGGACGACTTCACGAACTACGCGCAACGGATGGAAGCCGCGTGGGGCCGGGAGTACAA
GCGCGGCCGCTATTTCCACAAGCTGGCCGGCATCCCCGCTGTCGCCAACACCGGTATCAAGTTGATCGACAACGCGTTCT
TCCGCGACCGCATGCTCAAGGCGCTGTACAAGAAAGAGCAAGGGCCACAGCACAAGTACTGA

Upstream 100 bases:

>100_bases
CCTCCGCCGGTGCGCGTATTACGGCTGCTCGCCCGCGCAGCCGCCTCGACGTACCTTGGGTACTATCTGTCGCGACAGCC
CGACCGACGAGACGAGATTC

Downstream 100 bases:

>100_bases
TTTCGTGCGTCGACTGCACGGTTGTTGCCGCCGCTTCTCGCGATTCGTGTACAACAACCGTGCAGTCGGCGGCGTCAGTG
GTGATGGTGGTGTGGCCGCC

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: DGGGPL reductase 2; 2,3-di-O-geranylgeranylglyceryl phosphate reductase 2; Geranylgeranyl reductase 2; GGR 2 [H]

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTQRYDLVIAGGGPSGAAAAWQAAQTGAKVVVLDKAVFPRDKPCGDGLTARAVSYLQKMGLADEVATFHRVNRVTVFSPS
QWELSFPKRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVRQGAEVTGPELDANGRVIGVTLKGGEKVYGDAVIAADGAYS
PIKRALKIDSQYNGYQAIAIRSEMHANRPDSDSLDIYLKLQFQGDQLPGYGWVFPMGDGIFNIGLGYVNSYKNWQSINAT
QFLGEFLRTLPRDWDLPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPASGAGISKALESGLAAGECAI
AALTNGGPDDFTNYAQRMEAAWGREYKRGRYFHKLAGIPAVANTGIKLIDNAFFRDRMLKALYKKEQGPQHKY

Sequences:

>Translated_393_residues
MTQRYDLVIAGGGPSGAAAAWQAAQTGAKVVVLDKAVFPRDKPCGDGLTARAVSYLQKMGLADEVATFHRVNRVTVFSPS
QWELSFPKRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVRQGAEVTGPELDANGRVIGVTLKGGEKVYGDAVIAADGAYS
PIKRALKIDSQYNGYQAIAIRSEMHANRPDSDSLDIYLKLQFQGDQLPGYGWVFPMGDGIFNIGLGYVNSYKNWQSINAT
QFLGEFLRTLPRDWDLPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPASGAGISKALESGLAAGECAI
AALTNGGPDDFTNYAQRMEAAWGREYKRGRYFHKLAGIPAVANTGIKLIDNAFFRDRMLKALYKKEQGPQHKY
>Mature_392_residues
TQRYDLVIAGGGPSGAAAAWQAAQTGAKVVVLDKAVFPRDKPCGDGLTARAVSYLQKMGLADEVATFHRVNRVTVFSPSQ
WELSFPKRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVRQGAEVTGPELDANGRVIGVTLKGGEKVYGDAVIAADGAYSP
IKRALKIDSQYNGYQAIAIRSEMHANRPDSDSLDIYLKLQFQGDQLPGYGWVFPMGDGIFNIGLGYVNSYKNWQSINATQ
FLGEFLRTLPRDWDLPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPASGAGISKALESGLAAGECAIA
ALTNGGPDDFTNYAQRMEAAWGREYKRGRYFHKLAGIPAVANTGIKLIDNAFFRDRMLKALYKKEQGPQHKY

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 42829; Mature: 42698

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRYDLVIAGGGPSGAAAAWQAAQTGAKVVVLDKAVFPRDKPCGDGLTARAVSYLQKMG
CCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
LADEVATFHRVNRVTVFSPSQWELSFPKRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVR
CHHHHHHHHHHCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH
QGAEVTGPELDANGRVIGVTLKGGEKVYGDAVIAADGAYSPIKRALKIDSQYNGYQAIAI
CCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEEECCCHHHHHHHHHCCCCCCCEEEEEE
RSEMHANRPDSDSLDIYLKLQFQGDQLPGYGWVFPMGDGIFNIGLGYVNSYKNWQSINAT
EHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEECCHHHHHCCCCCCCCCHH
QFLGEFLRTLPRDWDLPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPA
HHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCC
SGAGISKALESGLAAGECAIAALTNGGPDDFTNYAQRMEAAWGREYKRGRYFHKLAGIPA
CCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCH
VANTGIKLIDNAFFRDRMLKALYKKEQGPQHKY
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQRYDLVIAGGGPSGAAAAWQAAQTGAKVVVLDKAVFPRDKPCGDGLTARAVSYLQKMG
CCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
LADEVATFHRVNRVTVFSPSQWELSFPKRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVR
CHHHHHHHHHHCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH
QGAEVTGPELDANGRVIGVTLKGGEKVYGDAVIAADGAYSPIKRALKIDSQYNGYQAIAI
CCCCCCCCCCCCCCEEEEEEECCCCEEECCEEEEECCCHHHHHHHHHCCCCCCCEEEEEE
RSEMHANRPDSDSLDIYLKLQFQGDQLPGYGWVFPMGDGIFNIGLGYVNSYKNWQSINAT
EHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEECCHHHHHCCCCCCCCCHH
QFLGEFLRTLPRDWDLPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPA
HHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCC
SGAGISKALESGLAAGECAIAALTNGGPDDFTNYAQRMEAAWGREYKRGRYFHKLAGIPA
CCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCH
VANTGIKLIDNAFFRDRMLKALYKKEQGPQHKY
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA