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The map label for this gene is yidA [C]

Identifier: 119867168

GI number: 119867168

Start: 1203069

End: 1204733

Strand: Direct

Name: yidA [C]

Synonym: Mkms_1117

Alternate gene names: 119867168

Gene position: 1203069-1204733 (Clockwise)

Preceding gene: 119867167

Following gene: 119867173

Centisome position: 20.97

GC content: 68.53

Gene sequence:

>1665_bases
GTGGGATTTTTCAAGGTCGTGGCCGTCGACATCGACGGCACCCTCACGTCGAACGGTGCGCTGTCCTCGGCGGCCGTGCG
CGCGATCCGCGACGCCCGGCTGAACGGAACGCAGGTGGTGCTGGTGACCGGTCGCATCGGGCGCGAGTTGCAGGCGGAGT
TCCCGGATCTCTCCGACCACGTCGACGCAGTGGTGCTCGAGAACGGTGCGGTTGCGGTGGTCGACGGCCGATCGGTGGCG
CTCGCACCGCCGGTGGATCCCGCGCTCGACGCGGAACTGAGTGCGCGTGGAATACCGTTCCGCCGAGGGGAGACCCTCAT
CGCCGCGGACGGTCAGTACGCCGCGGCCACCGTGGAGGCGATCGGAGAACTCGGTCTGGACTGCCAGATCATCCGTAACC
GGGGTGCGCTGATGGTGCTGCCTGCGGGCGTCACCAAGGGGACCGGTCTGTGCGGCGTGCTGGCCCGGATGAACCGCTCC
CCGCACAACACGATCGCGATCGGAGACGCCGAGAACGACGTGTCGATGATGGCGGCCGCCGAACTCGGTGTGGCCGTCGC
CAATGCGCCCCCCTCGGTGAAGGCCCACGCCGACGAGGTGTTGAGCGAGAGCGACGGCGAGGGGGTCGCCGGGATACTCA
CCGGACCGATCTTGAGCGGAGCGCGTCGCTGGTGCCCGATGCGACGGTGGATCGACATCGGTGCATTCGACGACGGTGCG
CCGACTCGCCTCCCGGGCAGTCAGGGGCGGATCGTGGTCACCGGCCCGGCCGGTTCGGGGAAGAGCCACATCATCGGATT
GATGGCGGAACGCTGGATTCTCGCCGGGTACGGGGTGCTGGTGGTCGACCCCGAGGGCGATCACACGCAACTGGCGACGC
TCGACCACGTGGCCGCCGTCGACAGCCGCTACCACCTGCCGCAACCGTCCGATCTCGTCGCCATGCTGCATCCCAGCAGC
AGCGCGGTGGTGGATCTGTCCGCGCTGTCCACCGACGAGAAGAGAGACTACGTGCACCGGTTGCGCCCTGTCGTCGAGGC
GCACCGGGAACAGTACGGCTTCCCGCACTGGACCGTCTACGACGAAGCGCATCTGCTCGGCCCGGGGCAGGAGGTCCGGT
GGGTTCGCCGGGGCGGATACGTGCTGTCCTCGTTCGTCGCCGCGGCGCTGCCGGCCGACGAGATCGACGCCAGTGACGTG
GTGGTCGAGATGGAAGACTCCGATCAGAGTCCGTCCGCATTGCATCCGGCGCCGCGCGCCGCGGTGCGCTACGGCGGAAA
TCCCAAGCGGGCGTTCGCGGTTGCCGAGCGCCGCACGGCACACGTCAGGCACCGGCACAAGTACGCCGATGTCGCGCTGC
CCAGAGAGCGGCGGTTCTACTTCCATTCCGTGGACGGTCAGTCGATTGCGCCCGCGGGCACCATGGAGGAGTTCGGCGCC
GCGCTGCGAAGGCTCACCCCCCAGGCGCTGGAATTTCACCTCGAGCGCGGAGATTTCTCCCGGTGGCTGGAGCGCATCAT
CAACGACAGGAAACTGGCCGCGGAGGTGGCGTCGTGGGAGGACGAGATGGCGGCGCATCGGGCGGCGGAGGTCGAACGGG
TCCGCCAACAGCTCATCCGTGCTGTTCGTGACCGTTATCTCGACGACCGCGGTGCGCTGGACTGA

Upstream 100 bases:

>100_bases
CCGAGGTGCGCATTCTGCCTCGAGATCGGCGATGATGACCCGACAGGGGGGCGAAGGTGGCGCGTCGGGTCTCGAATGCA
GCGCCTGATCCGGGAGAGCC

Downstream 100 bases:

>100_bases
GCCCGGAATGTCTTCTCCGCCGCGACCGCGAGGCTGACGGCGGTGGCGATGCCGAAGATCCGCAACCAGGCCCCGGTGTC
GAGGGGGGCGGTCTCGAACA

Product: HAD family hydrolase

Products: NA

Alternate protein names: PGP; PGPase [H]

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MGFFKVVAVDIDGTLTSNGALSSAAVRAIRDARLNGTQVVLVTGRIGRELQAEFPDLSDHVDAVVLENGAVAVVDGRSVA
LAPPVDPALDAELSARGIPFRRGETLIAADGQYAAATVEAIGELGLDCQIIRNRGALMVLPAGVTKGTGLCGVLARMNRS
PHNTIAIGDAENDVSMMAAAELGVAVANAPPSVKAHADEVLSESDGEGVAGILTGPILSGARRWCPMRRWIDIGAFDDGA
PTRLPGSQGRIVVTGPAGSGKSHIIGLMAERWILAGYGVLVVDPEGDHTQLATLDHVAAVDSRYHLPQPSDLVAMLHPSS
SAVVDLSALSTDEKRDYVHRLRPVVEAHREQYGFPHWTVYDEAHLLGPGQEVRWVRRGGYVLSSFVAAALPADEIDASDV
VVEMEDSDQSPSALHPAPRAAVRYGGNPKRAFAVAERRTAHVRHRHKYADVALPRERRFYFHSVDGQSIAPAGTMEEFGA
ALRRLTPQALEFHLERGDFSRWLERIINDRKLAAEVASWEDEMAAHRAAEVERVRQQLIRAVRDRYLDDRGALD

Sequences:

>Translated_554_residues
MGFFKVVAVDIDGTLTSNGALSSAAVRAIRDARLNGTQVVLVTGRIGRELQAEFPDLSDHVDAVVLENGAVAVVDGRSVA
LAPPVDPALDAELSARGIPFRRGETLIAADGQYAAATVEAIGELGLDCQIIRNRGALMVLPAGVTKGTGLCGVLARMNRS
PHNTIAIGDAENDVSMMAAAELGVAVANAPPSVKAHADEVLSESDGEGVAGILTGPILSGARRWCPMRRWIDIGAFDDGA
PTRLPGSQGRIVVTGPAGSGKSHIIGLMAERWILAGYGVLVVDPEGDHTQLATLDHVAAVDSRYHLPQPSDLVAMLHPSS
SAVVDLSALSTDEKRDYVHRLRPVVEAHREQYGFPHWTVYDEAHLLGPGQEVRWVRRGGYVLSSFVAAALPADEIDASDV
VVEMEDSDQSPSALHPAPRAAVRYGGNPKRAFAVAERRTAHVRHRHKYADVALPRERRFYFHSVDGQSIAPAGTMEEFGA
ALRRLTPQALEFHLERGDFSRWLERIINDRKLAAEVASWEDEMAAHRAAEVERVRQQLIRAVRDRYLDDRGALD
>Mature_553_residues
GFFKVVAVDIDGTLTSNGALSSAAVRAIRDARLNGTQVVLVTGRIGRELQAEFPDLSDHVDAVVLENGAVAVVDGRSVAL
APPVDPALDAELSARGIPFRRGETLIAADGQYAAATVEAIGELGLDCQIIRNRGALMVLPAGVTKGTGLCGVLARMNRSP
HNTIAIGDAENDVSMMAAAELGVAVANAPPSVKAHADEVLSESDGEGVAGILTGPILSGARRWCPMRRWIDIGAFDDGAP
TRLPGSQGRIVVTGPAGSGKSHIIGLMAERWILAGYGVLVVDPEGDHTQLATLDHVAAVDSRYHLPQPSDLVAMLHPSSS
AVVDLSALSTDEKRDYVHRLRPVVEAHREQYGFPHWTVYDEAHLLGPGQEVRWVRRGGYVLSSFVAAALPADEIDASDVV
VEMEDSDQSPSALHPAPRAAVRYGGNPKRAFAVAERRTAHVRHRHKYADVALPRERRFYFHSVDGQSIAPAGTMEEFGAA
LRRLTPQALEFHLERGDFSRWLERIINDRKLAAEVASWEDEMAAHRAAEVERVRQQLIRAVRDRYLDDRGALD

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR006382
- InterPro:   IPR006378 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: =3.1.3.18 [H]

Molecular weight: Translated: 59716; Mature: 59585

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFFKVVAVDIDGTLTSNGALSSAAVRAIRDARLNGTQVVLVTGRIGRELQAEFPDLSDH
CCCEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCC
VDAVVLENGAVAVVDGRSVALAPPVDPALDAELSARGIPFRRGETLIAADGQYAAATVEA
CCEEEEECCCEEEECCCEEEECCCCCCCCCCCHHCCCCCCCCCCEEEEECCCHHHHHHHH
IGELGLDCQIIRNRGALMVLPAGVTKGTGLCGVLARMNRSPHNTIAIGDAENDVSMMAAA
HHHCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
ELGVAVANAPPSVKAHADEVLSESDGEGVAGILTGPILSGARRWCPMRRWIDIGAFDDGA
HHCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHEEECCCCCCC
PTRLPGSQGRIVVTGPAGSGKSHIIGLMAERWILAGYGVLVVDPEGDHTQLATLDHVAAV
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCCCEEHHHHHHHHH
DSRYHLPQPSDLVAMLHPSSSAVVDLSALSTDEKRDYVHRLRPVVEAHREQYGFPHWTVY
CCCCCCCCCCCEEEEECCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
DEAHLLGPGQEVRWVRRGGYVLSSFVAAALPADEIDASDVVVEMEDSDQSPSALHPAPRA
CCCEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCH
AVRYGGNPKRAFAVAERRTAHVRHRHKYADVALPRERRFYFHSVDGQSIAPAGTMEEFGA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
ALRRLTPQALEFHLERGDFSRWLERIINDRKLAAEVASWEDEMAAHRAAEVERVRQQLIR
HHHHCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVRDRYLDDRGALD
HHHHHHCCCCCCCC
>Mature Secondary Structure 
GFFKVVAVDIDGTLTSNGALSSAAVRAIRDARLNGTQVVLVTGRIGRELQAEFPDLSDH
CCEEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCCCC
VDAVVLENGAVAVVDGRSVALAPPVDPALDAELSARGIPFRRGETLIAADGQYAAATVEA
CCEEEEECCCEEEECCCEEEECCCCCCCCCCCHHCCCCCCCCCCEEEEECCCHHHHHHHH
IGELGLDCQIIRNRGALMVLPAGVTKGTGLCGVLARMNRSPHNTIAIGDAENDVSMMAAA
HHHCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
ELGVAVANAPPSVKAHADEVLSESDGEGVAGILTGPILSGARRWCPMRRWIDIGAFDDGA
HHCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCHHHHEEECCCCCCC
PTRLPGSQGRIVVTGPAGSGKSHIIGLMAERWILAGYGVLVVDPEGDHTQLATLDHVAAV
CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCCCEEHHHHHHHHH
DSRYHLPQPSDLVAMLHPSSSAVVDLSALSTDEKRDYVHRLRPVVEAHREQYGFPHWTVY
CCCCCCCCCCCEEEEECCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
DEAHLLGPGQEVRWVRRGGYVLSSFVAAALPADEIDASDVVVEMEDSDQSPSALHPAPRA
CCCEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCH
AVRYGGNPKRAFAVAERRTAHVRHRHKYADVALPRERRFYFHSVDGQSIAPAGTMEEFGA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
ALRRLTPQALEFHLERGDFSRWLERIINDRKLAAEVASWEDEMAAHRAAEVERVRQQLIR
HHHHCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVRDRYLDDRGALD
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]