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The map label for this gene is eccD3 [H]

Identifier: 119855353

GI number: 119855353

Start: 166499

End: 167917

Strand: Reverse

Name: eccD3 [H]

Synonym: Mkms_5967

Alternate gene names: 119855353

Gene position: 167917-166499 (Counterclockwise)

Preceding gene: 119855354

Following gene: 119855352

Centisome position: 77.47

GC content: 68.71

Gene sequence:

>1419_bases
ATGGATCCCGCCGCCGCAACCGGCCAAGTGCGTGTTGCCGTCATCGGCGACGGCAGAGCCGCCGACCTGGCACTGCCCAC
CACGCTGGCCATCCGCGAGTTGATCCCGCGGATCCGGGCGACCTTGGCGTCCGGCCGCGACGATGATGAGGTGCCCACCA
ACAACGGTGCGGACGTCGACGAGCTGCGCCCGTATTCGCTTGCGCCGCTTGGTGGCACACCATTCAGCTTGGACGCCACC
TTGGAAACGTTGGCCATCGACGACGGTGAGCAGCTGGTGTTGTGCAAGCTGCCGCCCGGGCCTGCGGCTCCTCCGGTGGT
CGAAGACATCGCTGATGCTGCGGCCATTCACTCCGCGAGCCGCTTCAAGCCGTTCACCCATGCGCTTCTACCTGCCGTGG
CACAGGTCGTGGTCCTGGCCTTGGGGGCGCTGGGCTGTGGGTTGGCCCTCGATGGCTGGCGGCGCGGCTACCAGCTATGG
GCGGCCGCCGGGCTGGGGGCGCTGACCGTCGTGTTCATCGCCGCCACCGTGATACTGCGGCGGCGTGGCTACACCGTCGC
TGCCGGGCGCATGGGTGTCGCAACGACCCTTCCGCTGGGGTTGGCGCTCGCGGCATCACTGCCCGGCGACGGGGCCGCGC
CGCGGGTCCTGCTGGCCGCAGCCTGCCTGCTGGCATGGGCCCTGCTCTTGCTGGTCCTCACCAGCACCTGGGTGGCCACC
TACACCGCGATCATCGCCATCAGCGCAACCGTCGCGATCGCCGCCGCGGTACGGACGCTGTGGCATCTGCCGTACCTGTC
ACTGGGGTGTGGAGTGCTCGCGGTGTCGCTCCTGCTAGCCAGTAACGCACCGACACTTTCGGCCGCCTGGGCGCGCTTCC
CGCTGCCCAACGTCCCCGCCCCGGGGGAACCGACACCACCGCCGAAATCGTTGGCCGAGATCGAGGATCTGCCCCGGCGA
GCGGCAACGAGCAACTCCTACCAGAGCGGTCTGATCGCCGCGTCGGTGATCCTGGCCGTGACCGGCTCCGTGTTGGTGCT
GTGGCTGCCCGCCGCGCCGGCACTGCTGGCGTGGTGGCTGGTCGTGGCCACCATCACTGTCACGGTGCTGCGGATGCGGA
TCTGGGATTCGGCGATTCCCGCCCTGTGGTTCCTGGCCGCACCGTTTCTGACCGTTGCCGCACTTACGGTTTCGTTCACC
GCCACCGGACACGCCATCGCTGGCCTGTACGCGGCCGCGGCCGCGGTGGGGATGACCGTGGTGCTCCTGATCGCCTCGAC
ACTCAAGCCCCGCGAATTGTCCATCCCGCGGCGGCGCTATCTCGACCTGTTCGAGAACACCCTGCTGATCACCATCGTGC
CGGCCATGTTGTGGCTCGTCGGGCTGGTCAGTCTCATCCGCAACCGGGGGTCGCTGTGA

Upstream 100 bases:

>100_bases
AAACGCAGAAGGCGGTGATGGAGCTGGCTGGGTCGATCGCGCAGTACTACCCCGCCCGCCAGCCGCAGCAGCGCCCTGAG
GACATGGGGAGATACTGACG

Downstream 100 bases:

>100_bases
TGCTTCGCCAAGTCGGTTCGATCGCGGCAGCGGTGGCGCTGCTGGTGGTATGCAGCCCGCCGCCACAGGCCGCCGCCTTG
ACGATCCCCGTCGTCGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D3; Type VII secretion system protein eccD3; T7SS protein eccD3 [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MDPAAATGQVRVAVIGDGRAADLALPTTLAIRELIPRIRATLASGRDDDEVPTNNGADVDELRPYSLAPLGGTPFSLDAT
LETLAIDDGEQLVLCKLPPGPAAPPVVEDIADAAAIHSASRFKPFTHALLPAVAQVVVLALGALGCGLALDGWRRGYQLW
AAAGLGALTVVFIAATVILRRRGYTVAAGRMGVATTLPLGLALAASLPGDGAAPRVLLAAACLLAWALLLLVLTSTWVAT
YTAIIAISATVAIAAAVRTLWHLPYLSLGCGVLAVSLLLASNAPTLSAAWARFPLPNVPAPGEPTPPPKSLAEIEDLPRR
AATSNSYQSGLIAASVILAVTGSVLVLWLPAAPALLAWWLVVATITVTVLRMRIWDSAIPALWFLAAPFLTVAALTVSFT
ATGHAIAGLYAAAAAVGMTVVLLIASTLKPRELSIPRRRYLDLFENTLLITIVPAMLWLVGLVSLIRNRGSL

Sequences:

>Translated_472_residues
MDPAAATGQVRVAVIGDGRAADLALPTTLAIRELIPRIRATLASGRDDDEVPTNNGADVDELRPYSLAPLGGTPFSLDAT
LETLAIDDGEQLVLCKLPPGPAAPPVVEDIADAAAIHSASRFKPFTHALLPAVAQVVVLALGALGCGLALDGWRRGYQLW
AAAGLGALTVVFIAATVILRRRGYTVAAGRMGVATTLPLGLALAASLPGDGAAPRVLLAAACLLAWALLLLVLTSTWVAT
YTAIIAISATVAIAAAVRTLWHLPYLSLGCGVLAVSLLLASNAPTLSAAWARFPLPNVPAPGEPTPPPKSLAEIEDLPRR
AATSNSYQSGLIAASVILAVTGSVLVLWLPAAPALLAWWLVVATITVTVLRMRIWDSAIPALWFLAAPFLTVAALTVSFT
ATGHAIAGLYAAAAAVGMTVVLLIASTLKPRELSIPRRRYLDLFENTLLITIVPAMLWLVGLVSLIRNRGSL
>Mature_472_residues
MDPAAATGQVRVAVIGDGRAADLALPTTLAIRELIPRIRATLASGRDDDEVPTNNGADVDELRPYSLAPLGGTPFSLDAT
LETLAIDDGEQLVLCKLPPGPAAPPVVEDIADAAAIHSASRFKPFTHALLPAVAQVVVLALGALGCGLALDGWRRGYQLW
AAAGLGALTVVFIAATVILRRRGYTVAAGRMGVATTLPLGLALAASLPGDGAAPRVLLAAACLLAWALLLLVLTSTWVAT
YTAIIAISATVAIAAAVRTLWHLPYLSLGCGVLAVSLLLASNAPTLSAAWARFPLPNVPAPGEPTPPPKSLAEIEDLPRR
AATSNSYQSGLIAASVILAVTGSVLVLWLPAAPALLAWWLVVATITVTVLRMRIWDSAIPALWFLAAPFLTVAALTVSFT
ATGHAIAGLYAAAAAVGMTVVLLIASTLKPRELSIPRRRYLDLFENTLLITIVPAMLWLVGLVSLIRNRGSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 48989; Mature: 48989

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPAAATGQVRVAVIGDGRAADLALPTTLAIRELIPRIRATLASGRDDDEVPTNNGADVD
CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ELRPYSLAPLGGTPFSLDATLETLAIDDGEQLVLCKLPPGPAAPPVVEDIADAAAIHSAS
HCCCCEECCCCCCCCCCCCHHHEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RFKPFTHALLPAVAQVVVLALGALGCGLALDGWRRGYQLWAAAGLGALTVVFIAATVILR
HCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
RRGYTVAAGRMGVATTLPLGLALAASLPGDGAAPRVLLAAACLLAWALLLLVLTSTWVAT
HCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTAIIAISATVAIAAAVRTLWHLPYLSLGCGVLAVSLLLASNAPTLSAAWARFPLPNVPA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC
PGEPTPPPKSLAEIEDLPRRAATSNSYQSGLIAASVILAVTGSVLVLWLPAAPALLAWWL
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH
VVATITVTVLRMRIWDSAIPALWFLAAPFLTVAALTVSFTATGHAIAGLYAAAAAVGMTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VLLIASTLKPRELSIPRRRYLDLFENTLLITIVPAMLWLVGLVSLIRNRGSL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDPAAATGQVRVAVIGDGRAADLALPTTLAIRELIPRIRATLASGRDDDEVPTNNGADVD
CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ELRPYSLAPLGGTPFSLDATLETLAIDDGEQLVLCKLPPGPAAPPVVEDIADAAAIHSAS
HCCCCEECCCCCCCCCCCCHHHEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RFKPFTHALLPAVAQVVVLALGALGCGLALDGWRRGYQLWAAAGLGALTVVFIAATVILR
HCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
RRGYTVAAGRMGVATTLPLGLALAASLPGDGAAPRVLLAAACLLAWALLLLVLTSTWVAT
HCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTAIIAISATVAIAAAVRTLWHLPYLSLGCGVLAVSLLLASNAPTLSAAWARFPLPNVPA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC
PGEPTPPPKSLAEIEDLPRRAATSNSYQSGLIAASVILAVTGSVLVLWLPAAPALLAWWL
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH
VVATITVTVLRMRIWDSAIPALWFLAAPFLTVAALTVSFTATGHAIAGLYAAAAAVGMTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VLLIASTLKPRELSIPRRRYLDLFENTLLITIVPAMLWLVGLVSLIRNRGSL
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]