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The map label for this gene is yfdE [H]

Identifier: 119855238

GI number: 119855238

Start: 59443

End: 60696

Strand: Reverse

Name: yfdE [H]

Synonym: Mkms_5852

Alternate gene names: 119855238

Gene position: 60696-59443 (Counterclockwise)

Preceding gene: 119855239

Following gene: 119855237

Centisome position: 28.0

GC content: 62.6

Gene sequence:

>1254_bases
GTGTCCGCGAATATGGAGAGTCTGTTCGACGGTCTGACGATCCTCGAGCTGGGGCACGTGATCGCGGCGCCTTTCGCTGC
CTCGCTGATCGGCGACTTCGGAGCACAGGTCATCAAGATCGAAGACCCCGGCTCGGGGGACATGTTGCGTAGGTCCGGTC
CTCGTAAAGACGGAGTGCCCCTCTGGTGGAAGTCCGCGGCCCGGAACAAGTCAAGCGTCGCTGTCGATCTGCGGCTCGCC
GAAGGGCAAGCGCTCGTGCGCAAAATGGTCGAACGCGCCGACGTGGTGATCGAAAACTTCCGCCCGGGAACGCTTGAGCG
CTGGGGACTGGGATGGGAGGAGCTGCACGCAGCGAACCCGCGGCTGATCATGTTGCGGATTTCCGGGTACGGCCAGATCG
GCCCGGAGAGCGCAAAGCCGGGATATGGACGCGTCGGCGAGGCCATGAGCGGAGCGGTACACATCACCGGGCATCCTGAC
CGACCACCGACGCATTTCGGTTTCTCCCTCGGCGATGTCACGACAGGAATCATGGGTGCATTCGCTGTTGCCGGAGCACT
GTTCAAACGCGAAGCGATCGGGGATCGCTTCGATGGGGAATGTATCGACCTGGCTCTCTACGAATCACTGTTCCGTGGTA
TCGACTGGCAGGTCATCCTTTATGACCAGTTGAACTTTGTTGCCGAGCGTCAGGGCAATCAGTTCCAGGTCAGCCCGTCA
CCGGTGTCAGACACGTATCTCAGTGGCGATGGGGTGTGGTACACCGTGGCGACCGGCACCGTCCGGTCAGTGCAGAGCCT
GCTCGAACTGCTGGGCGGCACGACTCTGCGCAACGATCCGAAGTACGCGACTCAGGAACTGCAGATGTTGCACCGCGAGG
AGCTCGGCGAGATGGTTCGCCACTGGTTCGCCGAAAACAACTCCGATATCGTCGAAAAGACCTGCGCGAGCATGGGTGTC
GTGGCTGCGCGGATCTTCACGCCGGCAGAGATGTTCTCCAGTCCCACGTTCGCGGCTCGCCAGAGCCTGGTCGAGGTCGC
CGACCAGGAATTGGGTCCGGTCCGTGTCACCGGGGTGGTACCAAGGCTGACGAACTTTCCCGGATCCGTGCGCAGCACTG
GGCCCGGTCTCGGGATCCACGGCCAAGAGGTGCTGACCGAGTGGCTCGGCATGGCCGACTCGGAGTACGAGGCGCTGGTA
TCGAGTGGCGTCGTCGGGGCGGTCGACGTTGACGGAGAGGTTCCCGGGCATTGA

Upstream 100 bases:

>100_bases
GTCAACCGCGATGCACACGTAAAAATTCTGATCGACCCATCGGCATAGCACGACCGGTATCGCGCCGTCGATTGTCACGC
CGCCCCACCAAAGGAGTTAA

Downstream 100 bases:

>100_bases
GTTCGCTGCGCGACAAGGCCTGCATCGTCGGCGTTGGTCATACGGCCTACCGTCGTGATGGCACTGAGTCGGCAACGGAC
CTTGGCCTGCAACTCGAAGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSANMESLFDGLTILELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAVDLRLA
EGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPD
RPPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
PVSDTYLSGDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRHWFAENNSDIVEKTCASMGV
VAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGQEVLTEWLGMADSEYEALV
SSGVVGAVDVDGEVPGH

Sequences:

>Translated_417_residues
MSANMESLFDGLTILELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAVDLRLA
EGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPD
RPPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
PVSDTYLSGDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRHWFAENNSDIVEKTCASMGV
VAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGQEVLTEWLGMADSEYEALV
SSGVVGAVDVDGEVPGH
>Mature_416_residues
SANMESLFDGLTILELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVPLWWKSAARNKSSVAVDLRLAE
GQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANPRLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDR
PPTHFGFSLGDVTTGIMGAFAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPSP
VSDTYLSGDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVRHWFAENNSDIVEKTCASMGVV
AARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVVPRLTNFPGSVRSTGPGLGIHGQEVLTEWLGMADSEYEALVS
SGVVGAVDVDGEVPGH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=29.5, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=28.6384976525822, Blast_Score=163, Evalue=4e-40,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=28.643216080402, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=25.8215962441315, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI42794625, Length=410, Percent_Identity=26.0975609756098, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=26.4339152119701, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI266458393, Length=271, Percent_Identity=29.520295202952, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=30.2788844621514, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=35.6643356643357, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=35.6643356643357, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=30.46875, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786222, Length=418, Percent_Identity=26.7942583732057, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=25.1162790697674, Blast_Score=124, Evalue=9e-30,
Organism=Caenorhabditis elegans, GI115535051, Length=291, Percent_Identity=27.8350515463918, Blast_Score=95, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=291, Percent_Identity=25.7731958762887, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=28.960396039604, Blast_Score=169, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24585488, Length=251, Percent_Identity=28.2868525896414, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45044; Mature: 44912

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANMESLFDGLTILELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVP
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCC
LWWKSAARNKSSVAVDLRLAEGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANP
CEEHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
RLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDRPPTHFGFSLGDVTTGIMGA
CEEEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
FAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCEEEECCC
PVSDTYLSGDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVR
CCCCCEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HWFAENNSDIVEKTCASMGVVAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVV
HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEC
PRLTNFPGSVRSTGPGLGIHGQEVLTEWLGMADSEYEALVSSGVVGAVDVDGEVPGH
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SANMESLFDGLTILELGHVIAAPFAASLIGDFGAQVIKIEDPGSGDMLRRSGPRKDGVP
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCCCCC
LWWKSAARNKSSVAVDLRLAEGQALVRKMVERADVVIENFRPGTLERWGLGWEELHAANP
CEEHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
RLIMLRISGYGQIGPESAKPGYGRVGEAMSGAVHITGHPDRPPTHFGFSLGDVTTGIMGA
CEEEEEECCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
FAVAGALFKREAIGDRFDGECIDLALYESLFRGIDWQVILYDQLNFVAERQGNQFQVSPS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCEEEECCC
PVSDTYLSGDGVWYTVATGTVRSVQSLLELLGGTTLRNDPKYATQELQMLHREELGEMVR
CCCCCEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HWFAENNSDIVEKTCASMGVVAARIFTPAEMFSSPTFAARQSLVEVADQELGPVRVTGVV
HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEC
PRLTNFPGSVRSTGPGLGIHGQEVLTEWLGMADSEYEALVSSGVVGAVDVDGEVPGH
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]