| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is mnmG
Identifier: 119776787
GI number: 119776787
Start: 4303877
End: 4305766
Strand: Reverse
Name: mnmG
Synonym: Sama_3655
Alternate gene names: 119776787
Gene position: 4305766-4303877 (Counterclockwise)
Preceding gene: NA
Following gene: 119776786
Centisome position: 99.99
GC content: 53.7
Gene sequence:
>1890_bases ATGCAATTTCATGAACGGTTTGATGTGATAGTAGTAGGTGGCGGTCATGCCGGTACCGAAGCCGCCTTGGCTGCAGCCCG TATGGGATGCAAGACACTGCTGCTCACCCACAATGTCGATACCCTGGGTCAGATGTCCTGTAACCCTGCCATTGGCGGTA TTGGTAAAGGACATCTGGTAAAAGAGATAGATGCGCTGGGTGGTGCAATGGCGATCGCCACCGATTTTTCAGGGATCCAA TTCCGTACCCTGAATTCCAGCAAAGGTCCAGCGGTCAGAGCGACCCGCGCTCAGGCCGACAGAGCGCTCTACAAAGCCAA GATCCTGAATATTCTGCAGCATCAGCCTAACCTGCGGATTTTCCAGCAAGCCGTAGATGATTTGGTGGTAGAGAATGGTC GGGTTATCGGCGCTGTTACCCAAATGGGACTGGCCTTTGAAGCACCAGCCGTGGTGCTGACAGCCGGTACCTTCCTGGGA GGCAAAATTCACATAGGTCTGGAAAATTACAGCGGTGGCCGCGCTGGCGACCAACCAGCCATCGCCCTCGCCCATCGCTT ACGGGATCTGCCTCTGCGTGTAGGCCGTCTGAAAACCGGCACGCCTCCCCGTATTGATGCCAGAACCATTGATTTTTCAG TGATGACAGAGCAAAAAGGCGATACGCCCTTGCCTGTGATGTCATTTATCGGTGATCTGAGCCAACATCCAGAGCAGATC TCCTGCTACATCACTCACACCAATGAACAAACCCACGACATCATTCGTGGTGGATTGGATCGCAGCCCCATGTATTCCGG GGTGATCGAGGGTATTGGCCCGCGTTATTGTCCGTCTATTGAAGACAAAATTCATCGTTTTGCCGACAAGAACTCTCACC AGATCTTTATTGAGCCCGAAGGCCTGACGACAACCGAAATTTACCCGAACGGGATTTCCACCAGCTTGCCATTTGACGTT CAAATTCAGTTAGTTCGCTCTATTCGAGGCATGGAACAGGCTGAAATAGTTCGTCCTGGCTATGCCATTGAATATGACTA CTTCGATCCAAGAGATCTGAAAAACTCGTTGGAAACCAAGGTTATCGACGGTTTGTTCTTTGCCGGACAGATTAACGGCA CCACAGGTTACGAAGAAGCCGGCGCCCAGGGGCTGCTGGCCGGTCTCAACGCCGCACTGCAGGTACAGGGCAAAGAAGCA TGGGCACCTCGCCGCGATCAGGCTTATCTGGGGGTGCTGGTGGACGATCTCTCCACTTTGGGTACCAAAGAGCCCTATCG TATGTTCACCAGCCGCGCCGAATACCGTTTGCTGCTGCGTGAAGACAATGCCGATTTGCGTCTGACCGAAAAAGGTCGTG AACTGGGCCTGGTTGATGACTTCCGCTGGCAAAAATTCAGTGAAAAGCGCGAGTCCATCGAGCTTGAACAGCAGCGTTTG CGCGGCCAGTGGGTACATGTGAATTCACCTCAGGTGGCAGAGCTTAATGAAGTGCTCAGTGCCCCACTGACCCGCGAGGC GTCACTGGAAGATCTGCTGCGCCGACCTGAAATTGAATACGACACCCTGATGAAGGTTGACGGATTCGGTCCAGGGCTTG CCGATCCTCTGGCGGCAGAGCAGGTGCAGATCCAGGTTAAATACGCCGGTTACATCCAGCGCCAGCAGGATGAAATCGCC AAGGCTGAGCGTAACGAAAACACCCGCTTACCGCTGGATCTGGACTACAGCGAAGTGCCGGGGCTGTCCAACGAAGTGAC GGCCAAGCTCAATGCGCACAAGCCAGAGACCATAGGTCAGGCCTCTCGTATCTCAGGAGTGACCCCCGCAGCCGTTTCCA TTCTGCTGGTTCACCTGAAAAAACGTGGATTGTTGAGAAAGAGCGCTTAA
Upstream 100 bases:
>100_bases GGATCTTTACATGCAAACAGATCGTTCAACTCTGTCTCTGGCAATGCTAAAATACCCGGCTCGTTATGCGATCTTTGTTT TCTCGCTTTAAGGTAGTGTC
Downstream 100 bases:
>100_bases GCTCGCGCCACTCGCGTGCAAGGGAGGCCTCCGGGCTTCCCTTCACTTTTTCTGGGCCTCATAATAGCCCACCAAGACAG TTGTACCGACGGAGATAGCC
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA
Sequences:
>Translated_629_residues MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA >Mature_629_residues MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family
Homologues:
Organism=Homo sapiens, GI74024895, Length=638, Percent_Identity=46.2382445141066, Blast_Score=508, Evalue=1e-144, Organism=Homo sapiens, GI19882217, Length=663, Percent_Identity=44.4947209653092, Blast_Score=494, Evalue=1e-140, Organism=Homo sapiens, GI183227703, Length=678, Percent_Identity=43.5103244837758, Blast_Score=489, Evalue=1e-138, Organism=Escherichia coli, GI2367273, Length=629, Percent_Identity=75.3577106518283, Blast_Score=976, Evalue=0.0, Organism=Caenorhabditis elegans, GI17534255, Length=642, Percent_Identity=40.3426791277259, Blast_Score=466, Evalue=1e-131, Organism=Saccharomyces cerevisiae, GI6321202, Length=621, Percent_Identity=46.0547504025765, Blast_Score=507, Evalue=1e-144, Organism=Drosophila melanogaster, GI24658174, Length=637, Percent_Identity=46.6248037676609, Blast_Score=509, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MNMG_SHEAM (A1SBV1)
Other databases:
- EMBL: CP000507 - RefSeq: YP_929527.1 - ProteinModelPortal: A1SBV1 - SMR: A1SBV1 - STRING: A1SBV1 - GeneID: 4605902 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_3655 - NMPDR: fig|326297.7.peg.3443 - eggNOG: COG0445 - HOGENOM: HBG284774 - OMA: GIQFRVL - PhylomeDB: A1SBV1 - ProtClustDB: PRK05192 - GO: GO:0005737 - HAMAP: MF_00129 - InterPro: IPR013027 - InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 - PRINTS: PR00368 - TIGRFAMs: TIGR00136
Pfam domain/function: PF01134 GIDA
EC number: NA
Molecular weight: Translated: 69155; Mature: 69155
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHH KEIDALGGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRI HHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHH FQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPA HHHHHHHHHHCCCEEEEHHHHHCEEECCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH IALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI HHHHHHHHHCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEE SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPE EEEEEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLTTTEIYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETK CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHH VIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTL HHHCEEEEEEECCCCCCHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHH GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAE CCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCC QVQIQVKYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQ EEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCHHHCCCCCCCEEEEECCCCCHHHCC ASRISGVTPAAVSILLVHLKKRGLLRKSA HHHCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHH KEIDALGGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRI HHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHH FQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPA HHHHHHHHHHCCCEEEEHHHHHCEEECCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH IALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI HHHHHHHHHCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEE SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPE EEEEEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC GLTTTEIYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETK CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHH VIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTL HHHCEEEEEEECCCCCCHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHH GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAE CCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCC QVQIQVKYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQ EEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCHHHCCCCCCCEEEEECCCCCHHHCC ASRISGVTPAAVSILLVHLKKRGLLRKSA HHHCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA