Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is mnmG

Identifier: 119776787

GI number: 119776787

Start: 4303877

End: 4305766

Strand: Reverse

Name: mnmG

Synonym: Sama_3655

Alternate gene names: 119776787

Gene position: 4305766-4303877 (Counterclockwise)

Preceding gene: NA

Following gene: 119776786

Centisome position: 99.99

GC content: 53.7

Gene sequence:

>1890_bases
ATGCAATTTCATGAACGGTTTGATGTGATAGTAGTAGGTGGCGGTCATGCCGGTACCGAAGCCGCCTTGGCTGCAGCCCG
TATGGGATGCAAGACACTGCTGCTCACCCACAATGTCGATACCCTGGGTCAGATGTCCTGTAACCCTGCCATTGGCGGTA
TTGGTAAAGGACATCTGGTAAAAGAGATAGATGCGCTGGGTGGTGCAATGGCGATCGCCACCGATTTTTCAGGGATCCAA
TTCCGTACCCTGAATTCCAGCAAAGGTCCAGCGGTCAGAGCGACCCGCGCTCAGGCCGACAGAGCGCTCTACAAAGCCAA
GATCCTGAATATTCTGCAGCATCAGCCTAACCTGCGGATTTTCCAGCAAGCCGTAGATGATTTGGTGGTAGAGAATGGTC
GGGTTATCGGCGCTGTTACCCAAATGGGACTGGCCTTTGAAGCACCAGCCGTGGTGCTGACAGCCGGTACCTTCCTGGGA
GGCAAAATTCACATAGGTCTGGAAAATTACAGCGGTGGCCGCGCTGGCGACCAACCAGCCATCGCCCTCGCCCATCGCTT
ACGGGATCTGCCTCTGCGTGTAGGCCGTCTGAAAACCGGCACGCCTCCCCGTATTGATGCCAGAACCATTGATTTTTCAG
TGATGACAGAGCAAAAAGGCGATACGCCCTTGCCTGTGATGTCATTTATCGGTGATCTGAGCCAACATCCAGAGCAGATC
TCCTGCTACATCACTCACACCAATGAACAAACCCACGACATCATTCGTGGTGGATTGGATCGCAGCCCCATGTATTCCGG
GGTGATCGAGGGTATTGGCCCGCGTTATTGTCCGTCTATTGAAGACAAAATTCATCGTTTTGCCGACAAGAACTCTCACC
AGATCTTTATTGAGCCCGAAGGCCTGACGACAACCGAAATTTACCCGAACGGGATTTCCACCAGCTTGCCATTTGACGTT
CAAATTCAGTTAGTTCGCTCTATTCGAGGCATGGAACAGGCTGAAATAGTTCGTCCTGGCTATGCCATTGAATATGACTA
CTTCGATCCAAGAGATCTGAAAAACTCGTTGGAAACCAAGGTTATCGACGGTTTGTTCTTTGCCGGACAGATTAACGGCA
CCACAGGTTACGAAGAAGCCGGCGCCCAGGGGCTGCTGGCCGGTCTCAACGCCGCACTGCAGGTACAGGGCAAAGAAGCA
TGGGCACCTCGCCGCGATCAGGCTTATCTGGGGGTGCTGGTGGACGATCTCTCCACTTTGGGTACCAAAGAGCCCTATCG
TATGTTCACCAGCCGCGCCGAATACCGTTTGCTGCTGCGTGAAGACAATGCCGATTTGCGTCTGACCGAAAAAGGTCGTG
AACTGGGCCTGGTTGATGACTTCCGCTGGCAAAAATTCAGTGAAAAGCGCGAGTCCATCGAGCTTGAACAGCAGCGTTTG
CGCGGCCAGTGGGTACATGTGAATTCACCTCAGGTGGCAGAGCTTAATGAAGTGCTCAGTGCCCCACTGACCCGCGAGGC
GTCACTGGAAGATCTGCTGCGCCGACCTGAAATTGAATACGACACCCTGATGAAGGTTGACGGATTCGGTCCAGGGCTTG
CCGATCCTCTGGCGGCAGAGCAGGTGCAGATCCAGGTTAAATACGCCGGTTACATCCAGCGCCAGCAGGATGAAATCGCC
AAGGCTGAGCGTAACGAAAACACCCGCTTACCGCTGGATCTGGACTACAGCGAAGTGCCGGGGCTGTCCAACGAAGTGAC
GGCCAAGCTCAATGCGCACAAGCCAGAGACCATAGGTCAGGCCTCTCGTATCTCAGGAGTGACCCCCGCAGCCGTTTCCA
TTCTGCTGGTTCACCTGAAAAAACGTGGATTGTTGAGAAAGAGCGCTTAA

Upstream 100 bases:

>100_bases
GGATCTTTACATGCAAACAGATCGTTCAACTCTGTCTCTGGCAATGCTAAAATACCCGGCTCGTTATGCGATCTTTGTTT
TCTCGCTTTAAGGTAGTGTC

Downstream 100 bases:

>100_bases
GCTCGCGCCACTCGCGTGCAAGGGAGGCCTCCGGGCTTCCCTTCACTTTTTCTGGGCCTCATAATAGCCCACCAAGACAG
TTGTACCGACGGAGATAGCC

Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA

Products: NA

Alternate protein names: Glucose-inhibited division protein A

Number of amino acids: Translated: 629; Mature: 629

Protein sequence:

>629_residues
MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ
FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG
GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI
SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV
QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA
WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL
RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA
KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA

Sequences:

>Translated_629_residues
MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ
FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG
GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI
SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV
QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA
WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL
RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA
KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA
>Mature_629_residues
MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDALGGAMAIATDFSGIQ
FRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRIFQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLG
GKIHIGLENYSGGRAGDQPAIALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI
SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPEGLTTTEIYPNGISTSLPFDV
QIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETKVIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEA
WAPRRDQAYLGVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL
RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAEQVQIQVKYAGYIQRQQDEIA
KAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQASRISGVTPAAVSILLVHLKKRGLLRKSA

Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34

COG id: COG0445

COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family

Homologues:

Organism=Homo sapiens, GI74024895, Length=638, Percent_Identity=46.2382445141066, Blast_Score=508, Evalue=1e-144,
Organism=Homo sapiens, GI19882217, Length=663, Percent_Identity=44.4947209653092, Blast_Score=494, Evalue=1e-140,
Organism=Homo sapiens, GI183227703, Length=678, Percent_Identity=43.5103244837758, Blast_Score=489, Evalue=1e-138,
Organism=Escherichia coli, GI2367273, Length=629, Percent_Identity=75.3577106518283, Blast_Score=976, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17534255, Length=642, Percent_Identity=40.3426791277259, Blast_Score=466, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6321202, Length=621, Percent_Identity=46.0547504025765, Blast_Score=507, Evalue=1e-144,
Organism=Drosophila melanogaster, GI24658174, Length=637, Percent_Identity=46.6248037676609, Blast_Score=509, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MNMG_SHEAM (A1SBV1)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_929527.1
- ProteinModelPortal:   A1SBV1
- SMR:   A1SBV1
- STRING:   A1SBV1
- GeneID:   4605902
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3655
- NMPDR:   fig|326297.7.peg.3443
- eggNOG:   COG0445
- HOGENOM:   HBG284774
- OMA:   GIQFRVL
- PhylomeDB:   A1SBV1
- ProtClustDB:   PRK05192
- GO:   GO:0005737
- HAMAP:   MF_00129
- InterPro:   IPR013027
- InterPro:   IPR004416
- InterPro:   IPR002218
- InterPro:   IPR020595
- PRINTS:   PR00368
- TIGRFAMs:   TIGR00136

Pfam domain/function: PF01134 GIDA

EC number: NA

Molecular weight: Translated: 69155; Mature: 69155

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV
CCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHH
KEIDALGGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRI
HHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHH
FQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPA
HHHHHHHHHHCCCEEEEHHHHHCEEECCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH
IALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI
HHHHHHHHHCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEE
SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPE
EEEEEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
GLTTTEIYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETK
CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHH
VIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTL
HHHCEEEEEEECCCCCCHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHH
GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL
CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAE
CCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCC
QVQIQVKYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQ
EEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCHHHCCCCCCCEEEEECCCCCHHHCC
ASRISGVTPAAVSILLVHLKKRGLLRKSA
HHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQFHERFDVIVVGGGHAGTEAALAAARMGCKTLLLTHNVDTLGQMSCNPAIGGIGKGHLV
CCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCHHHCCCCCCCCCCCCCCHHH
KEIDALGGAMAIATDFSGIQFRTLNSSKGPAVRATRAQADRALYKAKILNILQHQPNLRI
HHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHH
FQQAVDDLVVENGRVIGAVTQMGLAFEAPAVVLTAGTFLGGKIHIGLENYSGGRAGDQPA
HHHHHHHHHHCCCEEEEHHHHHCEEECCCEEEEEECEEECCEEEEEEECCCCCCCCCCHH
IALAHRLRDLPLRVGRLKTGTPPRIDARTIDFSVMTEQKGDTPLPVMSFIGDLSQHPEQI
HHHHHHHHHCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEE
SCYITHTNEQTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKNSHQIFIEPE
EEEEEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
GLTTTEIYPNGISTSLPFDVQIQLVRSIRGMEQAEIVRPGYAIEYDYFDPRDLKNSLETK
CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHH
VIDGLFFAGQINGTTGYEEAGAQGLLAGLNAALQVQGKEAWAPRRDQAYLGVLVDDLSTL
HHHCEEEEEEECCCCCCHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHHHHHHHH
GTKEPYRMFTSRAEYRLLLREDNADLRLTEKGRELGLVDDFRWQKFSEKRESIELEQQRL
CCCCHHHHHHCCCCEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGQWVHVNSPQVAELNEVLSAPLTREASLEDLLRRPEIEYDTLMKVDGFGPGLADPLAAE
CCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCC
QVQIQVKYAGYIQRQQDEIAKAERNENTRLPLDLDYSEVPGLSNEVTAKLNAHKPETIGQ
EEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCHHHCCCCCCCEEEEECCCCCHHHCC
ASRISGVTPAAVSILLVHLKKRGLLRKSA
HHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA