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The map label for this gene is yciR [C]

Identifier: 119776759

GI number: 119776759

Start: 4269142

End: 4271271

Strand: Reverse

Name: yciR [C]

Synonym: Sama_3627

Alternate gene names: 119776759

Gene position: 4271271-4269142 (Counterclockwise)

Preceding gene: 119776764

Following gene: 119776758

Centisome position: 99.19

GC content: 48.97

Gene sequence:

>2130_bases
ATGATAAATTATAACCTTTTCAGTGACCTGATTGAGTATATTCCAGTGGGGATTGTCGTCCATGGTCCTCAATCAGAAAT
TTTGTATGCCAATGACAGAGCATCTGAAATTCTCGGCCTGAGCACTGCGCAGATGCTGGGGAAGGTAGATATTGACCCCG
CATGGCGGTTCGACTTTCCCGATGGCACCCCAATGAGCCTTGCAGATTACCCTGTAAACCGGGTGCTTAAGTGCAAGGAA
GGTGTATGGGGAATGATTCTGAAAGTGCACAGGCCTGTTGCTAAGGATGTTGCCTGGGTGTTGTGTAACGCCTTTCCGAG
TATCGGCGAGGATGGCGAAGTCTTACAGGTCATTACGTGTTTTACCGATATCTCAGCGCTTAAGCATGCCGAAGAGGCCC
TTAAAGCCTCCGAAGAGCGCTTGAACCTGATGCTGCAAGGTGCCAATGACGCGGCATGGGATTGGGATCTTCGCCAACAC
ACCGTTTACTACTCTCCCAGGTGGTGGCAGATGATCGGTAGAGAACCCGACGAGCTGGAACCCACAGAGGACTTGTGGGT
CAAGCTGTTGCACCCGGACGATTATCAAAAAGTCATGGACAAAATGAATGGGTTGTTCGATAGATCCGGCCCTTCTTCCT
TTGATACCGAATTTAGATTGCAGACCAAGTCGGGTAGTTACCTACCCGTGCTTTGCAGAGGGGTTATTCTCCGTGGGGCT
GATGGAACACCGCTTCGGATGTCTGGCACTAATATGGATTTAACAGAGCGTAAAGAATCAGAAGCGCGAATTTATCAATT
GGCCTACTACGATGTGTTAACCGGTCTGGCCAACCGAACCTTGTTAATGGAGCGTCTCAAGGCTGCCATCGCACTCTGTG
AGCGCAGTAAACAGATTGGCGCGCTGTTGATTATCGATCTTGATAATTTCAAAATTCTCAATGACACCATGGGTCATGAT
GTCGGCGATGCGTTATTAAAAATGGTGGCTGATCGTCTGCTTCAAGCGGTTCGACGCTGCGAGCTGGTCGCCCGATTGGG
TGGTGATGAGTTTGTTATTGTTATGGAAAATCTGGGCATTGATGAGCGGGGAGCAGCGCTTAAAGCCAAATCGGTTGGCC
AAAAGGTCCGGGGCTTATTGAACGACCCTTTTATGTTGGCTGGAAAGCAGCTTCGAACCTCACCCAGCATCGGGATAGCC
TTGTTTGCCGAGGGCCGCCCTGGCTTGGAGGAACTCCTCAAACAGGCGGATGTGGCTATGTATCAGGCAAAGGAAGCAGG
CAAAAATGCTTTGCGTTTCTTTGATCCGGCTATGCAGGCTGCGGTGGAGGAGCGGGTTGCGCTGGAAAATGATTTACGCA
ACGGGGTGTTGGAAAACGAGTTCAGGCTTTTCTGTCAGCCTCAAGTTGACGCGTGTGGCAGGCTGTGTGGTGGTGAAGTG
TTGATCCGCTGGCAGCATCCGGTTCGAGGCCTGGTGATGCCCAACCAGTTTATCCCTTTGGCTGAGCAAACCGACCTGAT
CATACCTATAGGGGAATGGGTATTGCGCAAGACTTGTGAGACTTTGGTTGAATGGGAGAGTCATCCGAGCCTGGCACAAA
TCTCACTGTCGGTTAACGTCAGTGTGAATCAGGTTCGAGACCACAATTTTGTTGAACGGGTATTGGCAATAATTGATGAC
TGCGGCGCCAATCCTGCGCGCATTATGCTGGAATTAACTGAAAGTTTGATGGCTGAGAATGTTGAGGAAATCATCTTAAA
AATGAATGCTCTACGAGTGCGAGGGGTTCGCTTTTCAGTAGATGATTTTGGTACAGGCTATTCCTCTCTTAGTTACCTTA
AACGCTTCCCCTTATCAGAGCTCAAAATTGACCAGTCTTTTGTCAGAGAAATAGCTTTAAATCAACATGATGCAGTAATT
ACCGAGATTATTATTACACTGGCTAAAAAGTTGGGCTTGGGTGTGCTGGCTGAAGGGGTTGAAACCGAAGATCAATTAAA
TTTCTTACTGGCCCATGACTGCAGCTATTTCCAGGGCTATTTGTTCGGCAAACCCTGCGCGATAGAGCTGTTCGCTAGCA
GCTTTATGGATCTGATGGAGCCGGTCAGCAGACATATCAGACAAGGCTAA

Upstream 100 bases:

>100_bases
TAGGGAAGGTTTTTTGCATTCGCAGTTCATGCACTCGTCGGCACTGATGGGTAGTTGGGAAGATTGAGCTGACAACCCGC
CCTTATGCGTTAGCAAAGTA

Downstream 100 bases:

>100_bases
TCATTCGTAAACTTGCATTTCGCTGTCGCTATAATAGCTATTACAATGGCCTCCAAGTTGGTATTTTTCGATAACTAATT
GCTATGGATATTTTTTCCGC

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MINYNLFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPMSLADYPVNRVLKCKE
GVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQH
TVYYSPRWWQMIGREPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGA
DGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHD
VGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIA
LFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEV
LIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIIDD
CGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVI
TEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFASSFMDLMEPVSRHIRQG

Sequences:

>Translated_709_residues
MINYNLFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPMSLADYPVNRVLKCKE
GVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQH
TVYYSPRWWQMIGREPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGA
DGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHD
VGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIA
LFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEV
LIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIIDD
CGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVI
TEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFASSFMDLMEPVSRHIRQG
>Mature_709_residues
MINYNLFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFPDGTPMSLADYPVNRVLKCKE
GVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQH
TVYYSPRWWQMIGREPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGA
DGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKILNDTMGHD
VGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIA
LFAEGRPGLEELLKQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEV
LIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNVSVNQVRDHNFVERVLAIIDD
CGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVI
TEIIITLAKKLGLGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFASSFMDLMEPVSRHIRQG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=485, Percent_Identity=32.9896907216495, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=33.8672768878719, Blast_Score=230, Evalue=3e-61,
Organism=Escherichia coli, GI226510982, Length=460, Percent_Identity=30.8695652173913, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI1786507, Length=272, Percent_Identity=31.9852941176471, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081980, Length=272, Percent_Identity=32.7205882352941, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788381, Length=569, Percent_Identity=24.4288224956063, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.8063241106719, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=31.404958677686, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=32.9268292682927, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1787055, Length=432, Percent_Identity=26.8518518518519, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.8775510204082, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788849, Length=437, Percent_Identity=26.5446224256293, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=32.7868852459016, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=35.8823529411765, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=33.1428571428571, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=32.9479768786127, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=32.620320855615, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=33.5365853658537, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=33.8983050847458, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=33.7278106508876, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=180, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1789650, Length=431, Percent_Identity=22.2737819025522, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=36.4705882352941, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1787410, Length=131, Percent_Identity=29.0076335877863, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 79510; Mature: 79510

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINYNLFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFP
CCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCHHHHHCCHHHHHHCCCCCCCCEECCCC
DGTPMSLADYPVNRVLKCKEGVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITC
CCCCCCHHHCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
FTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDELE
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCC
PTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGA
CCHHHEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCEEECC
DGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIG
CCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGI
EEEEEECCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
DERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAM
CCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
YQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCHHHHHHHCCCEE
LIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNV
EEEECCCCCCEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
SVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSV
EHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEH
DDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLGLGVLAEGV
HHCCCCHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCC
ETEDQLNFLLAHDCSYFQGYLFGKPCAIELFASSFMDLMEPVSRHIRQG
CCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINYNLFSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDFP
CCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCHHHHHCCHHHHHHCCCCCCCCEECCCC
DGTPMSLADYPVNRVLKCKEGVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITC
CCCCCCHHHCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
FTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGREPDELE
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCC
PTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRGVILRGA
CCHHHEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCEEECC
DGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIG
CCCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGI
EEEEEECCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
DERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAM
CCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
YQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVDACGRLCGGEV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCHHHHHHHCCCEE
LIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLAQISLSVNV
EEEECCCCCCEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
SVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALRVRGVRFSV
EHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECEEEEH
DDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLGLGVLAEGV
HHCCCCHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCC
ETEDQLNFLLAHDCSYFQGYLFGKPCAIELFASSFMDLMEPVSRHIRQG
CCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]