| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776749
Identifier: 119776749
GI number: 119776749
Start: 4257967
End: 4258611
Strand: Reverse
Name: 119776749
Synonym: Sama_3617
Alternate gene names: NA
Gene position: 4258611-4257967 (Counterclockwise)
Preceding gene: 119776750
Following gene: 119776748
Centisome position: 98.9
GC content: 59.53
Gene sequence:
>645_bases ATGAGTGATACTTCCCGCGGTTTTTTGGGACGCTGGCAAGCCCGGCGTGAAGCGGTAGCCGCCGAAGAAGCCGCTGAGCT TGCGAACACGCAAGAGCTTACCGACGCATCGATTACTGCTCCTGAGGTCCTGCCGACGGCTGATGCTGCGCTGACTGATG CCCCCAAAGTGGCTGATACCCCAGCGGACTTAAGCGCGGAGGTTGAAGCTGATGGCGCTGCCGAGGTGCCCGCTGAACCC TTGCCGGATCCCGATTCCATCGAGGTGGGCGGCAGTTTTGCCCGCTTTATGTCGACCGATGTCGATCCACTGACCCGCAC GGCTGCCCTGCGCGCCCTGTGGAAGCAACCCCAGTACAACCATATCGACGGCCTGATTGAGTATGCACTCGACTATTCCA ATCAGCCCAAACTGAGCGCCGATGCCTCGATGGAGCTGGCGAAAAAGGTGTTCAGGCACGTGATGGAAGCCACCACCGAA GAGGAAGAGCCTCAGGTCGCAGCAACGTCCGCCCCCAGGGGAGAGGTGCTGGCCGATGCGGAGGACAATTTGCCTGAGGA GCCAGAGCAGTTGTCCCAAAATGACCTGGAGGAAGTTACAGAGGCAGAGAGCCCTGTCGCTCAGGGTCAGTTTAACCGAG TTTAA
Upstream 100 bases:
>100_bases CCTTTATCACCCGTCACGGTGAAGTGGAAATCAGCGCCCACCGCCGCAAACACGTTAACCGCCGTAAGGAACTGGCTGAA GCAAACGCCAGGAGGTCTTG
Downstream 100 bases:
>100_bases TGTCCATAAAACTGGTATGTGAATTGCTGTAAATAGTGCGGTCAGGTGGCGCAAGTTGCGCAAAATAAACAGAAAAACAC CGACCCTTACGTACAGAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSDTSRGFLGRWQARREAVAAEEAAELANTQELTDASITAPEVLPTADAALTDAPKVADTPADLSAEVEADGAAEVPAEP LPDPDSIEVGGSFARFMSTDVDPLTRTAALRALWKQPQYNHIDGLIEYALDYSNQPKLSADASMELAKKVFRHVMEATTE EEEPQVAATSAPRGEVLADAEDNLPEEPEQLSQNDLEEVTEAESPVAQGQFNRV
Sequences:
>Translated_214_residues MSDTSRGFLGRWQARREAVAAEEAAELANTQELTDASITAPEVLPTADAALTDAPKVADTPADLSAEVEADGAAEVPAEP LPDPDSIEVGGSFARFMSTDVDPLTRTAALRALWKQPQYNHIDGLIEYALDYSNQPKLSADASMELAKKVFRHVMEATTE EEEPQVAATSAPRGEVLADAEDNLPEEPEQLSQNDLEEVTEAESPVAQGQFNRV >Mature_213_residues SDTSRGFLGRWQARREAVAAEEAAELANTQELTDASITAPEVLPTADAALTDAPKVADTPADLSAEVEADGAAEVPAEPL PDPDSIEVGGSFARFMSTDVDPLTRTAALRALWKQPQYNHIDGLIEYALDYSNQPKLSADASMELAKKVFRHVMEATTEE EEPQVAATSAPRGEVLADAEDNLPEEPEQLSQNDLEEVTEAESPVAQGQFNRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23020; Mature: 22889
Theoretical pI: Translated: 3.83; Mature: 3.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTSRGFLGRWQARREAVAAEEAAELANTQELTDASITAPEVLPTADAALTDAPKVADT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCC PADLSAEVEADGAAEVPAEPLPDPDSIEVGGSFARFMSTDVDPLTRTAALRALWKQPQYN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC HIDGLIEYALDYSNQPKLSADASMELAKKVFRHVMEATTEEEEPQVAATSAPRGEVLADA HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEECC EDNLPEEPEQLSQNDLEEVTEAESPVAQGQFNRV CCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCC >Mature Secondary Structure SDTSRGFLGRWQARREAVAAEEAAELANTQELTDASITAPEVLPTADAALTDAPKVADT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCC PADLSAEVEADGAAEVPAEPLPDPDSIEVGGSFARFMSTDVDPLTRTAALRALWKQPQYN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC HIDGLIEYALDYSNQPKLSADASMELAKKVFRHVMEATTEEEEPQVAATSAPRGEVLADA HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEECC EDNLPEEPEQLSQNDLEEVTEAESPVAQGQFNRV CCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA