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The map label for this gene is fdnI [C]

Identifier: 119776743

GI number: 119776743

Start: 4250629

End: 4251645

Strand: Reverse

Name: fdnI [C]

Synonym: Sama_3611

Alternate gene names: 119776743

Gene position: 4251645-4250629 (Counterclockwise)

Preceding gene: 119776744

Following gene: 119776742

Centisome position: 98.73

GC content: 55.06

Gene sequence:

>1017_bases
ATGTTATCCAAAACGTTTAACAAGTCACTGCAGCAGCTCTGGTCTGTGGCCTTGTTGGCGATAGCTCTGGTGATGGGACC
CGTTTCGGGTGCCTGGGCCGCCGATGAGCAATCCAGCCAACAACAGGCTGTGCAAACCAGTGATGCCGATCTGTGGCGTG
CGGTAAAAGCCGGTGAATCCGGTTATACCACCGCCCAGGGCGTTGAGGCAGGCGTGCTCATCAACGTGGCCGGTAATCAG
GGTAAGGAAGTCCGCAACCAGTATCTGACCCCCGTCATGGGTTTTGCTGTAGTGGGTGTGTTCGGTGCCTTCCTGCTGTT
CTATCTGGTCAACGGCCCCTCGAAGCTGCATCACGGCTTCTCGGGTAAGCTGGTGGCACGCTGGAGCAAGGCGGATCTGA
CTATCCACTGGGTGATGGCCATTGCCTGTATGCTGCTGATCTTCACCGGTTTAACCATCATGCTGGGGCGCCATGTACTC
GAACCCTATGTGGGCTCGGGTTTGTGGGCATCGCTCATCTACGGCAGTAAGACAGTGCACGACTTTGCCGGGCCCGTGTT
TATGTTGGCCTGGATACTGTGTGTGGTGAAGTGGATGCCGCTGCAAACCTTCAAGCTGTATGACCTTAAATGGTTCCTGC
TGGTGGGTGGCTACATCAACTTTGGCCCCTTCAAGGGCAAGCATCCCGACAGTGGTTTCGCCAATGCCGGTGAGAAGATG
TGGTTCTGGACCCTGACCATCTTCGGTCTGTTTATCAGCGTGACCGGGGTGATGTTGGTGCTGCCAGGCCTGGATCTGCC
GCGGGAAGCCTCAATGGCGGCCCTGCTGATCCACGCCATCAGTGCCATCATCATCATCGCCTTTACCATAGTGCATATCT
GGATGGCGACAGTGCTCAGCGAAGGTGGTATGGAGTGTATGAAGTCCGGTTACTGTGATGAAAACTGGGCTATTCAACAC
CACAACCTCTGGTACGATGAAATCAAAGCCAATGGCAGCTTGAAATACAAGGACTGA

Upstream 100 bases:

>100_bases
TGATCTGGGGCTACAACCCTCAGACAGGTGAGATTAACTGAGGCCAAGCTGTGGCAACAGGGCGCCTTAAATGGGCTCTG
TTGCCGCTATAGGAGTGAAA

Downstream 100 bases:

>100_bases
TCTATAGTCCAGTGTTGAAAAGGGCCCAGTTTTTACTGGGCCTTTCTACATAATCTGGCACCACAACCTCTGGCTTTTTA
CAACATCCAGCGAAATCAAG

Product: formate dehydrogenase subunit C

Products: CO2; NADH

Alternate protein names: Formate Dehydrogenase Cytochrome; Formate Dehydrogenase Subunit C; Formate Dehydrogenase C Subunit; Formate Dehydrogenase Subunit Gamma; Formate Dehydrogenase; Formate Dehydrogenase Cytochrome B Subunit; Formate Dehydrogenase-N; Cytochrome B Subunit Of Formate Dehydrogenase; Formate Dehydrogenase B-Type Cytochrome Subunit; Formate Dehydrogenase Subunit C FdnI; Formate Dehydrogenase Cytochromesubunit B; Cytochrome; Formate Dehydrogenase Cytochrome C Subunit Gamma Subunit; Formate Dehydrogenase N Gamma Subunit

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLSKTFNKSLQQLWSVALLAIALVMGPVSGAWAADEQSSQQQAVQTSDADLWRAVKAGESGYTTAQGVEAGVLINVAGNQ
GKEVRNQYLTPVMGFAVVGVFGAFLLFYLVNGPSKLHHGFSGKLVARWSKADLTIHWVMAIACMLLIFTGLTIMLGRHVL
EPYVGSGLWASLIYGSKTVHDFAGPVFMLAWILCVVKWMPLQTFKLYDLKWFLLVGGYINFGPFKGKHPDSGFANAGEKM
WFWTLTIFGLFISVTGVMLVLPGLDLPREASMAALLIHAISAIIIIAFTIVHIWMATVLSEGGMECMKSGYCDENWAIQH
HNLWYDEIKANGSLKYKD

Sequences:

>Translated_338_residues
MLSKTFNKSLQQLWSVALLAIALVMGPVSGAWAADEQSSQQQAVQTSDADLWRAVKAGESGYTTAQGVEAGVLINVAGNQ
GKEVRNQYLTPVMGFAVVGVFGAFLLFYLVNGPSKLHHGFSGKLVARWSKADLTIHWVMAIACMLLIFTGLTIMLGRHVL
EPYVGSGLWASLIYGSKTVHDFAGPVFMLAWILCVVKWMPLQTFKLYDLKWFLLVGGYINFGPFKGKHPDSGFANAGEKM
WFWTLTIFGLFISVTGVMLVLPGLDLPREASMAALLIHAISAIIIIAFTIVHIWMATVLSEGGMECMKSGYCDENWAIQH
HNLWYDEIKANGSLKYKD
>Mature_338_residues
MLSKTFNKSLQQLWSVALLAIALVMGPVSGAWAADEQSSQQQAVQTSDADLWRAVKAGESGYTTAQGVEAGVLINVAGNQ
GKEVRNQYLTPVMGFAVVGVFGAFLLFYLVNGPSKLHHGFSGKLVARWSKADLTIHWVMAIACMLLIFTGLTIMLGRHVL
EPYVGSGLWASLIYGSKTVHDFAGPVFMLAWILCVVKWMPLQTFKLYDLKWFLLVGGYINFGPFKGKHPDSGFANAGEKM
WFWTLTIFGLFISVTGVMLVLPGLDLPREASMAALLIHAISAIIIIAFTIVHIWMATVLSEGGMECMKSGYCDENWAIQH
HNLWYDEIKANGSLKYKD

Specific function: Formate Dehydrogenase Allows E. coli To Use Formate As Major Electron Donor During Anaerobic Respiration, When Nitrate Is Used As Electron Acceptor. Subunit Gamma Is The Cytochrome B556(Fdn) Component Of The Formate Dehydrogenase. [C]

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787750, Length=224, Percent_Identity=25.4464285714286, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1790325, Length=219, Percent_Identity=24.2009132420091, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.2.1.2

Molecular weight: Translated: 37203; Mature: 37203

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKTFNKSLQQLWSVALLAIALVMGPVSGAWAADEQSSQQQAVQTSDADLWRAVKAGES
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCC
GYTTAQGVEAGVLINVAGNQGKEVRNQYLTPVMGFAVVGVFGAFLLFYLVNGPSKLHHGF
CCCHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
SGKLVARWSKADLTIHWVMAIACMLLIFTGLTIMLGRHVLEPYVGSGLWASLIYGSKTVH
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
DFAGPVFMLAWILCVVKWMPLQTFKLYDLKWFLLVGGYINFGPFKGKHPDSGFANAGEKM
HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEHHCCCCCCCCCCCCCCCCCCCCCCCHH
WFWTLTIFGLFISVTGVMLVLPGLDLPREASMAALLIHAISAIIIIAFTIVHIWMATVLS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGGMECMKSGYCDENWAIQHHNLWYDEIKANGSLKYKD
HCCHHHHHCCCCCCCCCEEECCCCHHHHHCCCCEECCC
>Mature Secondary Structure
MLSKTFNKSLQQLWSVALLAIALVMGPVSGAWAADEQSSQQQAVQTSDADLWRAVKAGES
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCC
GYTTAQGVEAGVLINVAGNQGKEVRNQYLTPVMGFAVVGVFGAFLLFYLVNGPSKLHHGF
CCCHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
SGKLVARWSKADLTIHWVMAIACMLLIFTGLTIMLGRHVLEPYVGSGLWASLIYGSKTVH
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
DFAGPVFMLAWILCVVKWMPLQTFKLYDLKWFLLVGGYINFGPFKGKHPDSGFANAGEKM
HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEHHCCCCCCCCCCCCCCCCCCCCCCCHH
WFWTLTIFGLFISVTGVMLVLPGLDLPREASMAALLIHAISAIIIIAFTIVHIWMATVLS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGGMECMKSGYCDENWAIQHHNLWYDEIKANGSLKYKD
HCCHHHHHCCCCCCCCCEEECCCCHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA